1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaaagaggtgctctgtttctgtggttcatacttgcaaacttccag
species | Selaginella moellendorffii |
transcript | EFJ24514 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169102451|gb|FE503893.1|FE503893
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169059623|gb|FE468857.1|FE468857
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169078881|gb|FE489653.1|FE489653
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169060805|gb|FE469220.1|FE469220
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169109252|gb|FE512819.1|FE512819
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169040256|gb|FE448971.1|FE448971
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169114856|gb|FE516117.1|FE516117
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169103625|gb|FE506822.1|FE506822
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169035321|gb|FE443765.1|FE443765
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169053545|gb|FE463314.1|FE463314
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: GAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169109253|gb|FE512820.1|FE512820
genomic: GAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169053687|gb|FE461506.1|FE461506
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169045016|gb|FE452758.1|FE452758
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169103624|gb|FE506821.1|FE506821
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169114855|gb|FE516116.1|FE516116
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169078880|gb|FE489652.1|FE489652
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169040255|gb|FE448970.1|FE448970
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169053546|gb|FE463315.1|FE463315
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169060804|gb|FE469219.1|FE469219
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169053686|gb|FE461505.1|FE461505
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169035320|gb|FE443764.1|FE443764
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169045002|gb|FE452757.1|FE452757
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169102450|gb|FE503892.1|FE503892
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCGEST: gi|169074146|gb|FE481871.1|FE481871
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
EST: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAG GTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
genomic: TTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaa ... aaacttccagGTTCTCAACATTCCCACCAAGATCAACAAGGGAACTGTCGAGATCGTCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGAGCGCCTGCTCGTGTCGGACTTGTTGCCCCGATCGACGTGACCATTCCTCCTGGAAGCACTGGGCTTGATCCCTCGCAGACATCTTTCTTCCAGgttcgaccaaagaggtgctctgtttctgtggttcatacttgcaaacttccag
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