1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAAGCAGCTATCTCAAAGGCCAGAAGGCCTTCGAAACCTTGAGAGCAATCCAAGAGGAGCTTTCCAAGGTCAATCGATACAACTATATACCAGGCAAAAGgtgatcaaatctctttcgtttacgtactataacacgattttctgatcgaccgtag
species | Selaginella moellendorffii |
transcript | EFJ06390 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGAGGAGCTTTCCAAGGTCAATCGATACAACTATATACCAGGCAAAAG ATTCCTTCCGTTTCCAGCAAACTTTCGATTGAGAAAGCTCTACAGCGACCTEST: gi|169061250|gb|FE470363.1|FE470363
genomic: CAAGAGGAGCTTTCCAAGGTCAATCGATACAACTATATACCAGGCAAAAGgtgatcaaat ... tcgaccgtagATTCCTTCCGTTTCCAGCAAACTTTCGATTGAGAAAGCTCTACAGCGACCT
EST: CAAGAGGAGCTTTCCAAGGTCAATCGATACAACTATATACCAGGCAAAAG ATTCCTTCCGTTTCCAGCAAACTTTCGATTGAGAAAGCTCTACAGCGACCTEST: gi|169057457|gb|FE465761.1|FE465761
genomic: CAAGAGGAGCTTTCCAAGGTCAATCGATACAACTATATACCAGGCAAAAGgtgatcaaat ... tcgaccgtagATTCCTTCCGTTTCCAGCAAACTTTCGATTGAGAAAGCTCTACAGCGACCT
EST: CAAGAGGAGCTTTCCAAGGTCAATCGATACAACTATATACCAGGCAAAAG ATTCCTTCCGTTTCCAGCAAACTTTCGATTGAGAAAGCTCTACAGCGACCTEST: gi|169088330|gb|FE492048.1|FE492048
genomic: CAAGAGGAGCTTTCCAAGGTCAATCGATACAACTATATACCAGGCAAAAGgtgatcaaat ... tcgaccgtagATTCCTTCCGTTTCCAGCAAACTTTCGATTGAGAAAGCTCTACAGCGACCT
EST: CAAGAGGAGCTTTCCAAGGTCAATCGATACAACTATATACCAGGCAAAAG ATTCCTTCCGTTTCCAGCAAACTTTCGATTGAGAAAGCTCTACAGCGACCT
genomic: CAAGAGGAGCTTTCCAAGGTCAATCGATACAACTATATACCAGGCAAAAGgtgatcaaat ... tcgaccgtagATTCCTTCCGTTTCCAGCAAACTTTCGATTGAGAAAGCTCTACAGCGACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCAGCTATCTCAAAGGCCAGAAGGCCTTCGAAACCTTGAGAGCAATCCAAGAGGAGCTTTCCAAGGTCAATCGATACAACTATATACCAGGCAAAAGgtgatcaaatctctttcgtttacgtactataacacgattttctgatcgaccgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT