1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATCATGCTTGTTGGCTGGGGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctttgtcaaagagtttttttttttttttttccccgtgtgtaactcactcttgggggtttgatccgcgcag
species | Selaginella moellendorffii |
transcript | EFJ37320 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: NNNNNAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGA AGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGGEST: gi|169059394|gb|FE467523.1|FE467523
genomic: GGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctt ... atccgcgcagAGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGG
EST: NNNNNAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGA AGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGGEST: gi|169021157|gb|FE431468.1|FE431468
genomic: GGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctt ... atccgcgcagAGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGG
EST: NNNNNAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGA AGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGGEST: gi|169059832|gb|FE467844.1|FE467844
genomic: GGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctt ... atccgcgcagAGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGG
EST: NNNNNAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGA AGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGGEST: gi|169029817|gb|FE438385.1|FE438385
genomic: GGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctt ... atccgcgcagAGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGG
EST: NNNNNAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGA AGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGGEST: gi|169114320|gb|FE517077.1|FE517077
genomic: GGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctt ... atccgcgcagAGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGG
EST: NNNNNAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGA AGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGGEST: gi|169097551|gb|FE497993.1|FE497993
genomic: GGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctt ... atccgcgcagAGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGG
EST: NNNNNAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGA AGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGGEST: gi|169036671|gb|FE444190.1|FE444190
genomic: GGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctt ... atccgcgcagAGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGG
EST: NNNNNAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGA AGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGGEST: gi|169039349|gb|FE447230.1|FE447230
genomic: GGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctt ... atccgcgcagAGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGG
EST: NNNNNAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGA AGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGGEST: gi|169026681|gb|FE433967.1|FE433967
genomic: GGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctt ... atccgcgcagAGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGG
EST: NNNNNAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGA AGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGG
genomic: GGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctt ... atccgcgcagAGGCATCTCGTGGGTCACCAAGGATGGTGTCCAGCGACCAAATTACTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCATGCTTGTTGGCTGGGGGGGAAACAATGGATCCACGTTAACTGCTGGAATCATCGCCAATAGAGAgtgagccctttgtcaaagagtttttttttttttttttccccgtgtgtaactcactcttgggggtttgatccgcgcag
- - - - - - - - - - - - - - - - - - - - - - - GCTGGA