1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAACAGGAGATGAAGTGGAGAAAGCAGCAAAAGGAAATAGCTCAAGCCAAGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGGgtacattttgacgtcctttctcgatggtctcaagtaacccgcgtttttatttcttttgcag
species | Selaginella moellendorffii |
transcript | EFJ10635 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGG CAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGANAAGCCTTTTGAGCACEST: gi|169056801|gb|FE465404.1|FE465404
genomic: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGGgtacattttg ... tcttttgcagCAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCAC
EST: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGG CAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCACEST: gi|169078770|gb|FE489620.1|FE489620
genomic: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGGgtacattttg ... tcttttgcagCAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCAC
EST: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGG CAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCACEST: gi|169116430|gb|FE518196.1|FE518196
genomic: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGGgtacattttg ... tcttttgcagCAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCAC
EST: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGG CAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCACEST: gi|169115176|gb|FE515605.1|FE515605
genomic: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGGgtacattttg ... tcttttgcagCAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCAC
EST: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGG CAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCACEST: gi|169105692|gb|FE508458.1|FE508458
genomic: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGGgtacattttg ... tcttttgcagCAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCAC
EST: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGG CAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCACEST: gi|70671002|gb|DN839579.1|DN839579
genomic: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGGgtacattttg ... tcttttgcagCAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCAC
EST: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGG CAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCACEST: gi|169087543|gb|FE494634.1|FE494634
genomic: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGGgtacattttg ... tcttttgcagCAACTTGAAAAGATTCAAGAGAAGGATCTTGTGGAAAAGCCTTTTGAGCAC
EST: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGG CAACTTGAAAAGATTTCA-GAGAAGGATCTTGT
genomic: AGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGGgtacattttg ... tcttttgcagCAACTTGAAAAGATT-CAAGAGAAGGATCTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAACAGGAGATGAAGTGGAGAAAGCAGCAAAAGGAAATAGCTCAAGCCAAGGAAAATGTTAGCAGTGCTAACAGTGGACAGGCAACATCAGCTAAACGGgtacattttgacgtcctttctcgatggtctcaagtaacccgcgtttttatttcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT