1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CGGTCACCACGGCCACATCCTAGCACTCTACGTGCAATCTCGCGGAGATTTCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAGgtatgctctttgtacagagtgttttcttgcttatggactgtttactacttcacag
species | Selaginella moellendorffii |
transcript | EFJ23079 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: TCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAG CCGGAGGAAGGAGCGATCGAAGAACGCGCGCGGGATTACAACGCAAACTGGEST: gi|169018279|gb|FE427712.1|FE427712
genomic: TCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAGgtatgctctt ... tacttcacagCCGGAGGAAGGAGCGATCGAAGAACGCGCGCGGGATTACAACGCAAACTGG
EST: TCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAG CCGGAGGAAGGAGCGATCGAAGAACGCGCGCGGGATTACAACGCAAACTGGEST: gi|169023818|gb|FE429037.1|FE429037
genomic: TCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAGgtatgctctt ... tacttcacagCCGGAGGAAGGAGCGATCGAAGAACGCGCGCGGGATTACAACGCAAACTGG
EST: TCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAG CCGGAGGAAGGAGCGATCGAAGAACGCGCGCGGGATTACAACGCAAACTGGEST: gi|169079919|gb|FE489924.1|FE489924
genomic: TCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAGgtatgctctt ... tacttcacagCCGGAGGAAGGAGCGATCGAAGAACGCGCGCGGGATTACAACGCAAACTGG
EST: TCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAG CCGGAGGAAGGAGCGATCGAAGAACGCGCGCGGGATTACAACGCAAACTGGEST: gi|169067314|gb|FE473899.1|FE473899
genomic: TCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAGgtatgctctt ... tacttcacagCCGGAGGAAGGAGCGATCGAAGAACGCGCGCGGGATTACAACGCAAACTGG
EST: TCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAG CCGGAGGAAGGAGCGATCGAAGAACGCGCGCGGGATTACAACGCAAACTGG
genomic: TCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAGgtatgctctt ... tacttcacagCCGGAGGAAGGAGCGATCGAAGAACGCGCGCGGGATTACAACGCAAACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTCACCACGGCCACATCCTAGCACTCTACGTGCAATCTCGCGGAGATTTCATCGTCGTGGGCGATCTCATGAAGAGCATATCGCTACTTCTCTACAAGgtatgctctttgtacagagtgttttcttgcttatggactgtttactacttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA