1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CGGCTGCACGATCATTACGTGCAGCTTCACTGATGACCCGGCTACGTATTACTGCGTTGGAACAGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAGgtacgaagcaaatgcttttcctaaaggtctctgctgagcttcttctttgcttctctag
species | Selaginella moellendorffii |
transcript | EFJ23079 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: ACTGCGTTGGAACAGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAG GGACGTATATTGATCTTCACTGTAGAAGATGGCAAGTTCCAACTCNGT-ACEST: gi|169058900|gb|FE468734.1|FE468734
genomic: ACTGCGTTGGAACAGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAGgtacgaagca ... gcttctctagGGACGTATATTGATCTTCACTGTAGAAGATGGCAAGTTCCAACTC-GTTAC
EST: ATTGCGTTGGAACGGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAG GGACGTATATTGATCTTCACTGTAGAAGATGGCAAGTTCCAGCTCGTTACTEST: gi|169101941|gb|FE507764.1|FE507764
genomic: ACTGCGTTGGAACAGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAGgtacgaagca ... gcttctctagGGACGTATATTGATCTTCACTGTAGAAGATGGCAAGTTCCAACTCGTTACT
EST: ACTGCGTTGGAACAGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAG GGACGTATATTGATCTTCACTGTAGAAGATGGCAAGTTCCAACTCGTTACTEST: gi|169104116|gb|FE507105.1|FE507105
genomic: ACTGCGTTGGAACAGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAGgtacgaagca ... gcttctctagGGACGTATATTGATCTTCACTGTAGAAGATGGCAAGTTCCAACTCGTTACT
EST: ATTGCGTTGGAACGGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAG GGACGTATATTGATCTTCACTGTAGAAGATGGCAAGTTCCAGCTCGTTACTEST: gi|169067315|gb|FE473900.1|FE473900
genomic: ACTGCGTTGGAACAGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAGgtacgaagca ... gcttctctagGGACGTATATTGATCTTCACTGTAGAAGATGGCAAGTTCCAACTCGTTACT
EST: ATTGCGTTGGAACGGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAG GGACGTATATTGATCTTCACTGTAGAAGATGGCAAGTTCCAGCTCGTTACT
genomic: ACTGCGTTGGAACAGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAGgtacgaagca ... gcttctctagGGACGTATATTGATCTTCACTGTAGAAGATGGCAAGTTCCAACTCGTTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCTGCACGATCATTACGTGCAGCTTCACTGATGACCCGGCTACGTATTACTGCGTTGGAACAGCCTATGCTCTACCCGAGGAAAACGAACCAAGCAAGgtacgaagcaaatgcttttcctaaaggtctctgctgagcttcttctttgcttctctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG