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GATTGACGCCGTTGGAAGCAGTCGTAAAAACTGGGAAGGCCACACCAAGAAAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgtgttgcctgatgtcctttgccatgcatttacttgcttcatttgattgtgcag
species | Selaginella moellendorffii |
transcript | EFJ36654 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAG GGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCTEST: gi|169028862|gb|FE438067.1|FE438067
genomic: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgt ... gattgtgcagGGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCT
EST: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAG GGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCTEST: gi|169042314|gb|FE452862.1|FE452862
genomic: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgt ... gattgtgcagGGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCT
EST: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCANACGAG GGGATCATTGTCTTGGCAGCTACTAATCTCCCEST: gi|169026159|gb|FE432964.1|FE432964
genomic: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgt ... gattgtgcagGGGATCATTGTCTTGGCAGCTACTAATCTCCC
EST: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAG GGGATCATTGTCTTGNCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCTEST: gi|169040317|gb|FE448382.1|FE448382
genomic: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgt ... gattgtgcagGGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCT
EST: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAG GGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCTEST: gi|169038790|gb|FE447492.1|FE447492
genomic: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgt ... gattgtgcagGGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCT
EST: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAG GGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCTEST: gi|169067447|gb|FE473967.1|FE473967
genomic: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgt ... gattgtgcagGGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCT
EST: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAG GGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCTEST: gi|169063279|gb|FE472737.1|FE472737
genomic: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgt ... gattgtgcagGGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCT
EST: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAG GGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCTEST: gi|70670757|gb|DN839334.1|DN839334
genomic: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgt ... gattgtgcagGGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCT
EST: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAG GGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCTEST: gi|169063210|gb|FE472668.1|FE472668
genomic: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgt ... gattgtgcagGGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCT
EST: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAG GGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCT
genomic: AAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgt ... gattgtgcagGGGATCATTGTCTTGGCAGCTACTAATCTCCCGGAGAGTCTGGACCCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGACGCCGTTGGAAGCAGTCGTAAAAACTGGGAAGGCCACACCAAGAAAACACTGAACCAACTTCTTGTGGAGATGGACGGATTCGAAGCAAACGAGgtctgcatgtgttgcctgatgtcctttgccatgcatttacttgcttcatttgattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA