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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAAGTATAAGTGGGAGCCCATCAAGGACGACCTCGAGTCGGGCAATTCGGCCTATCCCATGGTGCTGGTCCAGGTGCCCATGTACAACGAGCGCGAGgtgatctattcgatgcctagcccaccctctcgctgtggctaacgaagtttagcttggttttttggtctggattctcctcccag

Basic information

species Selaginella moellendorffii
transcript EFJ35401
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ35401 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G443715_T01 (Zea mays), 5'ss of exon 1
GAACAAGTATAAGTGGGAGCCCATCAAGGACGACCTCGAGTC--GGGCAATT-CGGCCTATCCCATGGTGCTGGTCCAGGTGCCCATGTACAACGAGCGCGAGgtgatctattcgatgcctagcccaccctctcgctgtggctaacgaagtttagcttggttttttggtctggattctcctcccag---------------------------------------------------------------------------------------------------------
      |||   |||| ||||||||   |||| |  |||      |||     | ||||| ||||||||||| |||||| | ||||||| ||||||||| |||||||   |     ||||   |  || |   ||| |  | |  |   | |   || |   |    |  |  ||| |      |                                                                                                          
---GCGGTACCGGTGGCAGCCCATCCGCGACGGCGACGACCTCGAGGCGGCCGCCGCCTACCCCATGGTGCTCGTCCAGATCCCCATGTTCAACGAGCGGGAGgtgagtgagcgcctgccggacggacgccggcgccggcgttggctctggtcgtctcgcgatcaaagcgttcatttttaatttaaggctagctagtaggggaggacttacatacactgaccgtacgtgtgcgtgcgtgtgctgggctgctggctggctggctgcatggtggtgcgtgcgtggacgtgcag