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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCGGCGGATCATGGACAAGACGCACAACATCCGGAACCTCTCGGTGATTGCGCATGTCGATCACGgtgaggcggcgacaaatctctgtgtccttgtcgattctcatgcccaggcgcgcag

Basic information

species Selaginella moellendorffii
transcript EFJ33877
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ33877 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S138_93V6.1 (Physcomitrella patens), 5'ss of exon 2
--------------------ATGCGGCGG-ATCATGGACAAGACGCACAACATCCGGAACCTCTCGGTGATTGCGCATGTCGATCACGgtgaggcggcgacaa-atctct----gtgtccttgtc-gattctcatgcccaggcgcgcag---------------------------------------
                       | |||  ||||||||||||| |||||||||| ||||| | || || || || |||||||||||||||  | ||  | |    |||||    ||||  | ||| |  |||  || | |||     ||                                       
GTGAAGTTTTCGGCGGACGAGCTCCGCGCCATCATGGACAAGAAGCACAACATCAGGAACATGTCCGTCATCGCCCATGTCGATCACGgtatgtcgaagtccctgtctcttgcagtgtggtagtctgggtctggtgactagggtttgagtttgtagtgtgcgatgatcggaagggcgactgcttgaaa