1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CATCCTCACCAGCGCTGTGCCGAAGATGAAGCCGGGATTCAATCCAGCGTCCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgatcattctccttttttgtgcctgtgatctctcatctcttttttctccattgtctccag
species | Selaginella moellendorffii |
transcript | EFJ06085 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTGEST: gi|169053684|gb|FE461503.1|FE461503
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTGEST: gi|169104736|gb|FE508984.1|FE508984
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTGEST: gi|169100257|gb|FE501912.1|FE501912
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTGEST: gi|169104735|gb|FE508983.1|FE508983
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTGEST: gi|169053685|gb|FE461504.1|FE461504
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTGEST: gi|169113971|gb|FE516442.1|FE516442
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTGEST: gi|70671101|gb|DN839678.1|DN839678
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTGEST: gi|169052926|gb|FE460641.1|FE460641
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTGEST: gi|169106432|gb|FE507444.1|FE507444
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTGEST: gi|70670502|gb|DN839079.1|DN839079
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTGEST: gi|169052925|gb|FE460640.1|FE460640
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
EST: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAG GTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
genomic: CCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgat ... ttgtctccagGTGGATTGGATTGGCCAGAAAAATCAAATTGATGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCCTCACCAGCGCTGTGCCGAAGATGAAGCCGGGATTCAATCCAGCGTCCGGTGGAAGGCCCGAGTTCTACTTCGAAGAGGGAGGCACGCCGGAAGAGgtatgacgatcattctccttttttgtgcctgtgatctctcatctcttttttctccattgtctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA