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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGATAGCCGCCTCTCCTATTCGCAGGATCGCCACATTTTCCACATCATGAAGGCCGATGGTCTCACTTTTCTTTGCATGGCAACAGATACGTTTGGAAgtgagtgagtgaagattttttcttcctttcttttggagctctatagttttctagtctcacacacttgttctttcttttcttttttgtcgatcag

Basic information

species Selaginella moellendorffii
transcript EFJ06041
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ06041 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S231_34V6.1 (Physcomitrella patens), 5'ss of exon 2
AGCGATAGCCGCCTCTCCTATTCGCAGGATCGCCACATTTTCCACATCATGAAGGCCGATGGTCTCACTTTTCTTTGCATGGCAACAGATACGTTTGGAAgtgagtgagt------gaagattttttcttcctttcttttggagctctatag--ttttctagtctcaca---cacttgttctttcttttctttttt--gtcgatcag----------------------------------------------------------------------------------------
 | || || ||  | || ||||| || ||||| |||||||||||||| ||||| || |||||  | ||||||||||||||||| |  ||| | ||||||||| ||  | |      |  | ||     ||  ||  |  |     | |  |    ||    || |  ||    | ||   ||||  || |||||||  |  ||  ||                                                                                        
GGAGACAGTCGTGTGTCTTATTCTCAAGATCGGCACATTTTCCACATTATGAAAGCTGATGGCTTGACTTTTCTTTGCATGGCTAGCGATTCATTTGGAAgtaagatattttccttgccgtttacgatttgattcttcctcatattatgcaaaccttaggggttttgcagtttatttcaactttgattgcttttttaggcggagtagaattcagaagttcgaatcgtgctgtcaaactaaatgagtgcttatattattttttattttttattattttcttattggatttttccag

upper sequence: EFJ06041 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S52_233V6.1 (Physcomitrella patens), 5'ss of exon 3
AGCGATAGCCGCCTCTCCTATTCGCAGGATCGCCACATTTTCCACATCATGAAGGCCGATGGTCTCACTTTTCTTTGCATGGCAACAGATACGTTTGGAAgtgagtgagtgaagattttttcttcctttcttttggagc--tctatagttttctagtctcacacacttgttctttcttttcttttttgtcg--atcag--
 | ||||||||  | ||||||||||| || || |||||||| || ||| |||| || ||||| || || |||||||||||||| || ||| | ||||||||| || ||       ||| ||  |  ||   ||  | ||    |  | |  ||  |    |  ||     |    | |    |   ||  |  | |||  
GGAGATAGCCGTGTATCCTATTCGCAAGACCGGCACATTTTTCATATCTTGAAAGCTGATGGCCTGACATTTCTTTGCATGGCTACTGATTCTTTTGGAAgtaagagatctttcctttctttctttttcgcttgcgcgcatcttgcaataatcctggaagaggcagccacttgcacgtgatctgactgaaggaaacagtg

upper sequence: EFJ06041 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S115_125V6.4 (Physcomitrella patens), 5'ss of exon 2
AGCGATAGCCGCCTCTCCTATTCGCAGGATCGCCACATTTTCCACATCATGAAGGCCGATGGTCTCACTTTTCTTTGCATGGCAACAGATACGTTTGGAAgtgag----------tgagtgaag--attttttcttcctttcttttggagctctat---agttttctagtctcacacacttgttctttcttttctttt--ttgtcgatcag--------------------------------------------------------------------------------
 | || || ||  | |||||||| || ||||| ||||| |||||||| ||||| || |||||  | ||||||||||| ||||| |  ||||| ||||||||| ||          |   |   |  ||||||  ||   ||||| || |  |  ||   ||    |   | ||  || |   ||    | ||   |    || |  |   |                                                                                
GGGGACAGTCGGGTTTCCTATTCTCAAGATCGGCACATCTTCCACATTATGAAAGCTGATGGCTTGACTTTTCTTTGTATGGCTAGTGATACATTTGGAAgtaagatcctttccttaccttctgccatttttcgttttcttcttctgcacattaatttgagaacccggatttcgaacgccaatttcaaccttggatgcaattttgaagtggaatggctttgaaaagcttcggctagcggccagaggaacgctaatagttttattcttttctatttttatcgaacatggcag