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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTTGAAAAGCGCTGTTATGTCATTCAGAACGAGAATCAGCGAGAAAGTTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaattccaagcagccttaacgaaatgcactgtagcaaatattataattggaatgtgcaataatattagacacctcatctatatttcggttttat...

Basic information

species Physcomitrella patens
transcript PP1S9_318V6.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37846633|gb|BJ604641.1|BJ604641
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATT-CAG                         GACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcagGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
EST: gi|162186213|gb|FC362145.1|FC362145
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         GACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcagGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
EST: gi|37840414|gb|BJ598422.1|BJ598422
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATT-CAG                         GACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcagGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
EST: gi|18335610|gb|BJ167630.1|BJ167630
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         C
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcag-
EST: gi|18335610|gb|BJ167630.1|BJ167630
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         C
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcag-
EST: gi|18335610|gb|BJ167630.1|BJ167630
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         C
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcag-
EST: gi|162160286|gb|FC336572.1|FC336572
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         GACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcagGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
EST: gi|208382589|gb|DC919785.1|DC919785
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         GACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcagGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
EST: gi|67699862|gb|BJ960095.1|BJ960095
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         GACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcagGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
EST: gi|18341674|gb|BJ173709.1|BJ173709
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         GACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcagGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
EST: gi|67692207|gb|BJ952440.1|BJ952440
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         GACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcagGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
EST: gi|162237714|gb|FC413329.1|FC413329
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         GACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... taatcagcagGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCACAAT