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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTTGAAAAGCGCTGTTATGTCATTCAGAACGAGAATCAGCGAGAAAGTTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaattccaagcagccttaacgaaatgcactgtagcaaatattataattggaatgtgcaataatattagacacctcatctatatttcggttttattcaagagaagtgctaattctttagatattttgacatgcatcacacatgtgaaacgaatgtcattgctaacattctggttaacatgtgcttttaatcag

Basic information

species Physcomitrella patens
transcript PP1S9_318V6.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18341674|gb|BJ173709.1|BJ173709
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         --G-ACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... ttttaatcagCAGGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
EST: gi|37846633|gb|BJ604641.1|BJ604641
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATT-CAG                         --G-ACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... ttttaatcagCAGGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
EST: gi|208382589|gb|DC919785.1|DC919785
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         --G-ACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... ttttaatcagCAGGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
EST: gi|67692207|gb|BJ952440.1|BJ952440
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         --G-ACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... ttttaatcagCAGGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
EST: gi|67699862|gb|BJ960095.1|BJ960095
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         --G-ACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... ttttaatcagCAGGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
EST: gi|18335610|gb|BJ167630.1|BJ167630
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         CAGGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... ttttaatcagCAGGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
EST: gi|162160286|gb|FC336572.1|FC336572
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         --G-ACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... ttttaatcagCAGGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
EST: gi|37840414|gb|BJ598422.1|BJ598422
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATT-CAG                         --G-ACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... ttttaatcagCAGGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
EST: gi|162237714|gb|FC413329.1|FC413329
EST:     TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAG                         --G-ACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC
genomic: TTGGGTACACTGCTTCATTCCCGAGATTTGTGAACCAAGTATGATTGCAGgtacaacaat ... ttttaatcagCAGGACCAGTGAAGGGGAGAAAGATGAAAGAGGGATGTACAGTAGTTGCAC