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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGACGAAGAACTGCAGTGTTACTTACTTCAACTTGTCCAAGCTTTACGCTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAGgtagtgattactaactttttataacgttgttttcacccttagtcttccagaacatgtgtggaagttgagttctgctcagaatgttgcaggtagataatactgtagagggttattcatatcttttttaattgttatgtaatgagtatgctttgagctcacgaatttcatgttgggctgaacag

Basic information

species Physcomitrella patens
transcript PP1S58_188V6.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S58_188V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GLYMA04G10090.1 (Glycine max), 5'ss of exon 9
GAAGACGAAGAACTGCAGTGTTACTTACTTCAACTTGTCCAAGCTTTACGCTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAGgtagtgattactaactttttataacgttgttttcacccttagtcttccagaacatgtgtggaagttgagttctgctcagaatgttgcaggtagataatactgtagagggttattcatatcttttttaattgttatgtaatgagtatgctttgagctcacgaatttcatgttgggctgaacag
|| || |||||||| |||||||| || |||||| | || |||||| | || ||||| |||||||||||||| ||||||||| | || |||||| |  | ||||   ||   | |   ||||  |  |  ||      ||   |||      |  ||  |    | |||      |  | | | |  |||                                                                                             
GATGATGAAGAACTTCAGTGTTATTTGCTTCAATTGGTTCAAGCTCTTCGGTTTGAGCGTTCTGACAAATCTCGCCTTTCTCATTTCCTTGTCCAGCGTGgtac--atgcatgagagtttaagagctatttcaggtgctgtttctagttatatttggctttttgctgaaagtaacctaaattttgacag---------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162233434|gb|FC409919.1|FC409919
EST:     CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAG                         CGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGG
genomic: CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAGgtagtgatta ... ggctgaacagCGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGG
EST: gi|208352040|gb|DC925849.1|DC925849
EST:     CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAG                         CGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGG
genomic: CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAGgtagtgatta ... ggctgaacagCGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGG
EST: gi|67574088|gb|BJ946912.1|BJ946912
EST:     CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAG                         CGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGG
genomic: CTTTGAACGTTCTGACAAATCACGCCTTTCTTACTTTCTTGTCAAAAGAGgtagtgatta ... ggctgaacagCGGTTCAGAAATTCGAACTTGCAAGCTTTCTACGGTGGTACGTTACCGTGG