1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGTCCATATCGGCAACAAAGATTTATGCAAGAAGTGACTATACAATACAACTTATGCAATGAACCCTGgtacgtcatttcgaattcgctgatagtacttgcagtgggaatgtgttgatgtaccaagcatgcaacggataggtgtggactttctttggcatgctgctca...
species | Physcomitrella patens |
transcript | PP1S411_2V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGATTTATGCAAGAAGTGACTATACAATACAACTTATGCAATGAACCCTG GGCTAAATACAGCATGAGCATTGTGGCCGACCGTGGACTAAAGAAATCTCAEST: gi|162199087|gb|FC375805.1|FC375805
genomic: AGATTTATGCAAGAAGTGACTATACAATACAACTTATGCAATGAACCCTGgtacgtcatt ... tcgtttgtagGGCTAAATACAGCATGAGCATTGTGGCCGACCGTGGACTAAAGAAATCTCA
EST: AGATTTATGCCAGAAGTGACTATACAATACAACTTATGCAATGAACCCTG GGCTAAATACAGCATGAGCATTGTEST: gi|162257593|gb|FC433727.1|FC433727
genomic: AGATTTATGCAAGAAGTGACTATACAATACAACTTATGCAATGAACCCTGgtacgtcatt ... tcgtttgtagGGCTAAATACAGCATGAGCATTGT
EST: AGATTTATGCAAGAAGTGACTATACAATACAACTTATGCAATGAACCCTG GGCTAAATACAGCATGAGCATTGTGGCCGACCGTGGACTAAAGAAATCTCAEST: gi|162152307|gb|FC328494.1|FC328494
genomic: AGATTTATGCAAGAAGTGACTATACAATACAACTTATGCAATGAACCCTGgtacgtcatt ... tcgtttgtagGGCTAAATACAGCATGAGCATTGTGGCCGACCGTGGACTAAAGAAATCTCA
EST: AGATTTATGCAAGAAGTGACTATACAATACAACTTATGCAATGAACCCTG GGCTAAATACAGCATGAGCATTGTGGCCGACCGTGGACTAAAGAAATCTCA
genomic: AGATTTATGCAAGAAGTGACTATACAATACAACTTATGCAATGAACCCTGgtacgtcatt ... tcgtttgtagGGCTAAATACAGCATGAGCATTGTGGCCGACCGTGGACTAAAGAAATCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCCATATCGGCAACAAAGATTTATGCAAGAAGTGACTATACAATACAACTTATGCAATGAACCCTGgtacgtcatttcgaattcgctgatagtacttgcagtgggaatgtgttgatgtaccaagcatgcaacggataggtgtggactttctttggcatgctgctca
- - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - AGAAGT