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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATTCATACAAACGCATCATTGGATTCGTGCCTCAGGATGACATTGTCCATGGCAGTTTGACTGTTGAGGAAAACTTGTGGTTCAGCGCAAATTACAGgtatttctacatggctttgctttctggtgatgccacttattatcgagatctggtttataaaatgtagggcatttgttcatgaattcatgattctggtgcag

Basic information

species Physcomitrella patens
transcript PP1S167_121V6.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S167_121V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: LOC_Os10g30610.2 (Oryza sativa), 5'ss of exon 7
TGCATTCATACAAACGCATCATTGGATTCGTGCCTCAGGATGACATTGTCCATGGCAGTTTGACTGTTGAGGAAAACTTGTGGTTCAGCGCAAATTACAGgtatttc-tacatggctttgctttctgg--tgatgccacttattatcgagatctggtttataaaatgtagggcatttgttcatgaattcatgattctggtgcag
|||| ||||| ||    |||||||| || ||||| || ||||||||||||||||| |  ||||| |||||||||||||||||||| || ||    | ||||||||   |||| |  | || |   | |  || |  |  | ||||| ||  | |  ||  |   ||  |      || |     || | ||||   | |  |  
TGCAGTCATATAAGAAGATCATTGGTTTTGTGCCACAAGATGACATTGTCCATGGGAACTTGACGGTTGAGGAAAACTTGTGGTTTAGTGCGTGCTGCAGgtattaaatacaggcatatggtgcatagcttggttactttcattattgat-tatttttccttccattaaatatgcttatatcaaaacttatgaca-tagcac--

upper sequence: PP1S167_121V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: GRMZM2G455476_T01 (Zea mays), 5'ss of exon 5
TGCATTCATACAAACGCATCATTGGATTCGTGCCTCAGGATGACATTGTCCATGGCAGTTTGACTGTTGAGGAAAACTTGTGGTTCAGCGCAAATTACAGgtatttctacatggctttgctttctggtgatgccacttattatcgagatctggtttataa-aatgtagggcatttgttcatgaattcatgattctggtgcag
| | ||| ||||||    |||||||||| ||||| || ||||||||||| ||||| |  || || || ||||||||| | |||||||| ||||| | ||||||       |||  |||   ||    | |  ||  |  |||  |  | ||   |   |  ||| |     |||      | ||   |  |           
TCCGTTCCTACAAAAAGGTCATTGGATTTGTGCCACAAGATGACATTGTTCATGGAAACTTAACGGTGGAGGAAAACCTCTGGTTCAGTGCAAAGTGCAGgta-------atgattttaaattaaattcaaccctgtagtta--gttacctcactagcagcaatcttaacaattctactgtaaacctaacag----------

upper sequence: PP1S167_121V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EFJ28673 (Selaginella moellendorffii), 5'ss of exon 8
TGCATTCATACAAACGCATCATTGGATTCGTGCCTCAGGATGACATTGTCCATGGCAGTTTGACTGTTGAGGAAAACTTGTGGTTCAGCGCAAATTACAGgtatttctacatggctttgctttctggtgatgccacttattatcgagatctggtttataaaatgtagggcatttgttcatgaattcatgattctggtgcag
| |  || ||||     |||||||||||||| ||||| ||||| ||||| ||||| |||||||| || || || ||  |    || ||| | || |||||||       | | |||||| | |||  || || | || ||| | |   |||   |  | || | |   |||                              
TACGATCGTACAGGAAAATCATTGGATTCGTCCCTCAAGATGATATTGTTCATGGAAGTTTGACGGTGGAAGAGAATCTCGTCTTTAGCTCGAAATACAGgtt------cgttgctttg-tctcttttgttgtcgct-attcttg---tctaact-gttaagtttgttgcag-----------------------------

upper sequence: PP1S167_121V6.1 (Physcomitrella patens), 5'ss of exon 9
lower sequence: EFJ20608 (Selaginella moellendorffii), 5'ss of exon 8
TGCATTCATACAAACGCATCATTGGATTCGTGCCTCAGGATGACATTGTCCATGGCAGTTTGACTGTTGAGGAAAACTTGTGGTTCAGCGCAAATTACAGgtatttctacatggctttgctttctggtgatgccacttattatcgagatctg-gtttataaaatgtagggcatttgttcatgaattcatgattctggtgcag
| |  || ||||     |||||||||||||| ||||| ||||| ||||| ||||| |||||||| || || || ||  |    || ||| | || ||||||| |   ||| | |  |    || || ||  || |||  || || |  | |  |||| |    || ||                                  
TACGATCGTACAGGAAAATCATTGGATTCGTCCCTCAAGATGATATTGTTCATGGAAGTTTGACGGTGGAAGAGAATCTCGTCTTTAGCTCGAAATACAGgt-tcgttactttgtctc---ttttgttgtcgctactc-ttgtctaactgtaagtttgt----tgcag----------------------------------