1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAAGCCGAACCCAGATTTTCAAGATCCATACGCGAACCATGAATACCGAGCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatctacgtcattgggttaggtctggatgcatctatgtgttgaagttggcttttcacggaatttgacgttggctttcaattttatgttcgtttaa...
species | Physcomitrella patens |
transcript | PP1S152_13V6.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|208364215|gb|DC947291.1|DC947291
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|208368723|gb|DC947956.1|DC947956
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|208368723|gb|DC947956.1|DC947956
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|162256307|gb|FC432317.1|FC432317
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|162256307|gb|FC432317.1|FC432317
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|208350436|gb|DC926183.1|DC926183
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|208350436|gb|DC926183.1|DC926183
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|37847976|gb|BJ605984.1|BJ605984
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG ATATCCGGAGTGTGTGTACAGAGGCAGGTATGTATGCCATTCGTGCACGCAEST: gi|67720349|gb|BJ970608.1|BJ970608
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcagATATCCGGAGTGTGTGTACAGAGGCAGGTATGTATGCCATTCGTGCACGCA
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|67720349|gb|BJ970608.1|BJ970608
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|162267487|gb|FC444238.1|FC444238
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|162267487|gb|FC444238.1|FC444238
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|208366359|gb|DC947569.1|DC947569
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|208366359|gb|DC947569.1|DC947569
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|67579074|gb|BJ951225.1|BJ951225
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGGAGCAGEST: gi|67694853|gb|BJ955086.1|BJ955086
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATT---CA--A-CAGgttctaatct ... gcagg
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|67694853|gb|BJ955086.1|BJ955086
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|67720715|gb|BJ970974.1|BJ970974
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|67720715|gb|BJ970974.1|BJ970974
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|162257096|gb|FC432556.1|FC432556
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG GEST: gi|162257096|gb|FC432556.1|FC432556
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
EST: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAG G
genomic: GCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatct ... gcaggagcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGCCGAACCCAGATTTTCAAGATCCATACGCGAACCATGAATACCGAGCGAGACATTCGTTTCGAGCTTCTTTCCCGCCTTTGCCCCAATTCAACAGgttctaatctacgtcattgggttaggtctggatgcatctatgtgttgaagttggcttttcacggaatttgacgttggctttcaattttatgttcgtttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT