1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGATGCCACCTTGAACTTTACTTGTGTTGAGCTGCGCACCGCCGATGAAACTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAGgttataatactttcaccaattcaccattctaattatgtttttccgagccaaagatcaattagtactttgtgaatgccctcgtacactcgaagagcacaagaaaatgattcaacataaatcgactcatcttttacctttcatttcttaattcattttgtgtctcaatctttttcctattag
species | Physcomitrella patens |
transcript | PP1S9_318V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAG GTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCGEST: gi|37846633|gb|BJ604641.1|BJ604641
genomic: CTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAGgttataatac ... ttcctattagGTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCG
EST: CTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAG GTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCGEST: gi|208382589|gb|DC919785.1|DC919785
genomic: CTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAGgttataatac ... ttcctattagGTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCG
EST: CTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAG GTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCGEST: gi|67692207|gb|BJ952440.1|BJ952440
genomic: CTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAGgttataatac ... ttcctattagGTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCG
EST: TGTAAAGTTNCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAG GTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCGEST: gi|67699862|gb|BJ960095.1|BJ960095
genomic: TGTAAAGTT-CCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAGgttataatac ... ttcctattagGTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCG
EST: CTGAAGGTCTCGTATCGCAG GTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCGEST: gi|18335610|gb|BJ167630.1|BJ167630
genomic: CTGAAGGTCTCGTATCGCAGgttataatac ... ttcctattagGTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCG
EST: TGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAG GTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCGEST: gi|162160286|gb|FC336572.1|FC336572
genomic: TGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAGgttataatac ... ttcctattagGTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCG
EST: TCCTGAAGGTCTCGTATCGCAG GTTTTGCGAGCTGCATGGGAGCAGGGTTG-GGAGGTGGCTGCCGAGAATGCEST: gi|37840414|gb|BJ598422.1|BJ598422
genomic: TCCTGAAGGTCTCGTATCGCAGgttataatac ... ttcctattagGTTTTGCGAGCTGCATGGGAGCAGGG-TGTGGAGGTGGCTGCCGAGAATGC
EST: CTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAG GTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCGEST: gi|162237714|gb|FC413329.1|FC413329
genomic: CTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAGgttataatac ... ttcctattagGTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCG
EST: CTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAG GTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCG
genomic: CTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAGgttataatac ... ttcctattagGTTTTGCGAGCTGCATGGGAGCAGGGTGTGGAGGTGGCTGCCGAGAATGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGCCACCTTGAACTTTACTTGTGTTGAGCTGCGCACCGCCGATGAAACTGTAAAGTTCCCTGGTGCTTTGGCTGATCCTGAAGGTCTCGTATCGCAGgttataatactttcaccaattcaccattctaattatgtttttccgagccaaagatcaattagtactttgtgaatgccctcgtacactcgaagagcacaagaaaatgattcaacataaatcgactcatcttttacctttcatttcttaattcattttgtgtctcaatctttttcctattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG