1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTTGACATCATAAGTTCTGGAGAAAGATTTAGGATAGATTCTACGGCTAAGATGCCAGAACAGGGCTTGTGTGAAAGATGCGGATACATTTCAAGCCAGgtaaactttcaaaagacccgtagaaaacccaacacgctttctgctgaaaacgatgagtttttgtttggaagattttttgagttgcccagatgggtatgtcacgtgttgtgggcttgggattttgcattttattagtttgaagttatgtccaggctcatcttcgagctgattatgaatgtgcag
species | Physcomitrella patens |
transcript | PP1S54_267V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGATGCCAGAACAGGGCTTGTGTGAAAGATGCGGATACATTTCAAGCCAG AAATGGTGCAAGGCTTGTGTTCTGCTTGATGGTCTAAATCGTGGATTGCCCEST: gi|208354247|gb|DC957439.1|DC957439
genomic: AGATGCCAGAACAGGGCTTGTGTGAAAGATGCGGATACATTTCAAGCCAGgtaaactttc ... gaatgtgcagAAATGGTGCAAGGCTTGTGTTCTGCTTGATGGTCTAAATCGTGGATTGCCC
EST: AGATGCCAGAACAGGGCTTGTGTGAAAGATGCGGATACATTTCAAGCCAG AAATGGTGCAAGGCTTGTGTTCTGCTTGATGGTCTAAATCGTGGATTGCCCEST: gi|37821355|gb|BJ579421.1|BJ579421
genomic: AGATGCCAGAACAGGGCTTGTGTGAAAGATGCGGATACATTTCAAGCCAGgtaaactttc ... gaatgtgcagAAATGGTGCAAGGCTTGTGTTCTGCTTGATGGTCTAAATCGTGGATTGCCC
EST: AGATGCCAGAACAGGGCTTGTGTGAAAGATGCGGATACATTTCAAGCCAG AAATGGTGCAAGGCTTGTGTTCTGCTTGATGGTCTAAATCGTGGATTGCCCEST: gi|208372809|gb|DC956210.1|DC956210
genomic: AGATGCCAGAACAGGGCTTGTGTGAAAGATGCGGATACATTTCAAGCCAGgtaaactttc ... gaatgtgcagAAATGGTGCAAGGCTTGTGTTCTGCTTGATGGTCTAAATCGTGGATTGCCC
EST: AGATGCCAGAACAGGGCTTGTGTGAAAGATGCGGATACATTTCAAGCCAG AAATGGTGCAAGGCTTGTGTTCTGCTTGATGGTCTAAATCGTGGATTGCCC
genomic: AGATGCCAGAACAGGGCTTGTGTGAAAGATGCGGATACATTTCAAGCCAGgtaaactttc ... gaatgtgcagAAATGGTGCAAGGCTTGTGTTCTGCTTGATGGTCTAAATCGTGGATTGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGACATCATAAGTTCTGGAGAAAGATTTAGGATAGATTCTACGGCTAAGATGCCAGAACAGGGCTTGTGTGAAAGATGCGGATACATTTCAAGCCAGgtaaactttcaaaagacccgtagaaaacccaacacgctttctgctgaaaacgatgagtttttgtttggaagattttttgagttgcccagatgggtatgtcacgtgttgtgggcttgggattttgcattttattagtttgaagttatgtccaggctcatcttcgagctgattatgaatgtgcag
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