1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGTTGGGAACTGATGAATTGAATTCCTATCTAAACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttcagtattctggataaatcacgaggtctttttttcaagggatacattgtccaccttgcaacaccgaatgagtgtttgacttccgtcaagttacgaccgattcgtgaaccgaatgaggaggaatggcaaaattctttgtgacgtctcttactactgtgttgttggttccttcag
species | Physcomitrella patens |
transcript | PP1S165_119V6.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAG GCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCTEST: gi|37844002|gb|BJ602010.1|BJ602010
genomic: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttc ... gttccttcagGCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
EST: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAG GCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCTEST: gi|162267952|gb|FC444033.1|FC444033
genomic: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttc ... gttccttcagGCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
EST: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAG GCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCTEST: gi|208397887|gb|DC916642.1|DC916642
genomic: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttc ... gttccttcagGCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
EST: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAG GCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCTEST: gi|162160889|gb|FC337459.1|FC337459
genomic: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttc ... gttccttcagGCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
EST: ACCCCCATTTGGAAGCACTGGTTGGCAG GCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCTEST: gi|37852940|gb|BJ610948.1|BJ610948
genomic: ACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttc ... gttccttcagGCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
EST: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAG GCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCTEST: gi|67698003|gb|BJ958236.1|BJ958236
genomic: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttc ... gttccttcagGCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
EST: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAG GCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCTEST: gi|208397217|gb|DC920860.1|DC920860
genomic: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttc ... gttccttcagGCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
EST: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAG GCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCTEST: gi|162153012|gb|FC330042.1|FC330042
genomic: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttc ... gttccttcagGCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
EST: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAG GCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCTEST: gi|162153011|gb|FC330041.1|FC330041
genomic: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttc ... gttccttcagGCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
EST: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAG GCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCTEST: gi|37847708|gb|BJ605716.1|BJ605716
genomic: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttc ... gttccttcagGCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
EST: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAG GCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
genomic: AACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttc ... gttccttcagGCATAGCAGGAAACCTTGGTCAAAGTTCATCAATGCTGATAATCAGCATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTGGGAACTGATGAATTGAATTCCTATCTAAACAAATACCGCCTAGAGCTGGACCCCCATTTGGAAGCACTGGTTGGCAGgtttgtgttcagtattctggataaatcacgaggtctttttttcaagggatacattgtccaccttgcaacaccgaatgagtgtttgacttccgtcaagttacgaccgattcgtgaaccgaatgaggaggaatggcaaaattctttgtgacgtctcttactactgtgttgttggttccttcag
- - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG