Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag

Basic information

species Physcomitrella patens
transcript PP1S152_13V6.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 8
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag
| |||||||||||||||||  | || ||||||||||| || ||||| ||||| || || ||||||||||| || |||||||| ||||||||||| || ||||        |  ||||  |   |||  |     | ||| |  ||   ||      ||||  |      | |   |   || |||   |   || |     | || | |  |  |                                                                                 
GCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgt--------tttctgatttggctattata----tgatgattttcacttt------agttcatactcagttttactacagatgttcactgttaagtcaagaaagtatctccaagcatg------------------------------------------------------------------------------

upper sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 8
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag
| |||||||||||||||||  | || ||||||||||| || ||||| ||||| || || ||||||||||| || |||||||| ||||||||||| || ||||        |  ||||  |   |||  |    ||        |   |||      ||||  |      | |   ||  || |||  ||||  |   |        || || || | |                                                                              
GTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgt--------tttctgatttggctattatatgatt--------ttcacttt-----agttcatactcagttttactgcagatgttaagtcaagaaagtatctcactttagttcatcaagtg---------------------------------------------------------------------------

upper sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 8
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag
| ||||| |||||||||||  | || ||||||||||| || ||||| ||||| || || |||||||| || || |||||||| ||||||||||| |||||||    |   |   |         || |    |  ||||    |||  |||  |   | || || |        ||    | |     ||| | | ||      |  |||||                                                                                    
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgattttattgtgagagcatgtctctgc-aatgcgagtct--ttccataatgatgatgca--------ttccaaatgccctttcaaattcatttt---ttcttgtaag----------------------------------------------------------------------------------

upper sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
lower sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 8
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatct-tgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag
| ||||| |||||||||||  | || ||||||||||| || ||||| ||||| || || |||||||| || || |||||||| ||||||||||| || ||||    |   |   | |   |   || | |  |         |  |   || ||      |  ||  | ||       ||  | ||       |||| ||                                                                                                 
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgattttataatgaaagcatgtctctaacagtcaacgtgccagttttgccataattatgatgcattcaaa-atgcccttttaaattcaattttcg------------------------------------------------------------------------------------------------

upper sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
lower sequence: Vv11s0016g00230.t01 (Vitis vinifera), 5'ss of exon 8
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag
| || || |  || |||||| | || ||||||||||| || ||||| ||||| ||||| |||||||| || || ||||||||  |||||||||| || |||| |  |      |  |  |||   ||||  | | | || || | | |  ||      |   | |     || | | | | |  ||      | | ||  |   | ||| | |   ||  |  | |||  ||   ||  |  |                                                     
GTGGAGACAGAGAAGTTCAACGTACCATGCTTGAAATTGTAAATCAGCTTGATGGTTTTGATGCTCGAGGAAACATCAAAGTTATGATGGCAACAAACAGgttag-ttggaaaccaatctatagttctt--attcactgttgatgtcccact------taattttcaatcctttcttttgccaatgaacttaattgatttg---ttttttttctttcactatcttaattttgaccttttaaag-----------------------------------------------------

upper sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 8
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag
| || || || || || ||||| || ||||| || || |||||||| ||||| ||||| ||||||||||| || || ||||| |||||||| ||||| |||||   | ||    | |  ||  | | ||  | | ||   | |  | || |                                                                                                                                                 
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTTGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtac--tgccgacttcatctaagtcttttccaatcaaacttacattactccaaacag-------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 8
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag
| || || || || || ||||| || ||||| || || |||||||| || || ||||| ||||||||||| || || ||||| |||||||| ||||| |||||   | ||    | |  ||  | | ||  | | ||   | |  | || |                                                                                                                                                 
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTGGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtac--tgccgacttcatctaagtcttttccaatcaaacttacattactccaaacag-------------------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208364215|gb|DC947291.1|DC947291
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|208368723|gb|DC947956.1|DC947956
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|162256307|gb|FC432317.1|FC432317
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|208350436|gb|DC926183.1|DC926183
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|37847976|gb|BJ605984.1|BJ605984
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|67720349|gb|BJ970608.1|BJ970608
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|162267487|gb|FC444238.1|FC444238
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|208366359|gb|DC947569.1|DC947569
EST:     GACGGTTTCGTTGCTCGTGGTAGTATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|67579074|gb|BJ951225.1|BJ951225
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|67694853|gb|BJ955086.1|BJ955086
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|67720715|gb|BJ970974.1|BJ970974
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTNTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
EST: gi|162257096|gb|FC432556.1|FC432556
EST:     GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAG                         ACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA
genomic: GACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccc ... ttttttacagACCTGATACACTAGATCCAGCGCTTCTACGGCCAGGTCGGTTGGATCGTAA