1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATTTGTTTCAAAGCCAAGAACTACAACACCGCCGCATCCATTGCACGAAGACTCCTAGAGTTAAACTTGTCTCCAGCTGTAGCAAGCAAGACTCGCCAGgtaaaatttggttatcttttgtctgccgcccttcagtactagtgatgagaatacttgttgcatttgtcaatgtcgcctatcattgcttaagcgttgcact...
species | Physcomitrella patens |
transcript | PP1S86_189V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GACTCCTAGAGTTAAACTTGTCTCCAGCTGTAGCAAGCAAGACTCGCCAG GTCTTGCAAGTGTGTGAGAAAAACCCAAGAAATGAGATGGAGCTCAACTATEST: gi|67508348|gb|BJ941216.1|BJ941216
genomic: GACTCCTAGAGTTAAACTTGTCTCCAGCTGTAGCAAGCAAGACTCGCCAGgtaaaatttg ... tctcttgcagGTCTTGCAAGTGTGTGAGAAAAACCCAAGAAATGAGATGGAGCTCAACTAT
EST: GACTCCTAGAGTTAAACTTGTCTCCAGCTGTAGCAAGCAAGACTCGCCAG GTCTTGCAAGTGTGTGAGAAAAACCCAAGAAATGAGATGGAGCTCAACTATEST: gi|162240149|gb|FC418276.1|FC418276
genomic: GACTCCTAGAGTTAAACTTGTCTCCAGCTGTAGCAAGCAAGACTCGCCAGgtaaaatttg ... tctcttgcagGTCTTGCAAGTGTGTGAGAAAAACCCAAGAAATGAGATGGAGCTCAACTAT
EST: GACTCCTAGAGTTAAACTTGTCTCCAGCTGTAGCAAGCAAGACTCGCCAG GTCTTGCAAGTGTGTGAGAAAAACCCAAGAAATGAGATGGAGCTCAACTAT
genomic: GACTCCTAGAGTTAAACTTGTCTCCAGCTGTAGCAAGCAAGACTCGCCAGgtaaaatttg ... tctcttgcagGTCTTGCAAGTGTGTGAGAAAAACCCAAGAAATGAGATGGAGCTCAACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTGTTTCAAAGCCAAGAACTACAACACCGCCGCATCCATTGCACGAAGACTCCTAGAGTTAAACTTGTCTCCAGCTGTAGCAAGCAAGACTCGCCAGgtaaaatttggttatcttttgtctgccgcccttcagtactagtgatgagaatacttgttgcatttgtcaatgtcgcctatcattgcttaagcgttgcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA