1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTTAGTGTGAATGCGTACGAGGTATCTAAGGAGCCTGAAGATCTTATGGCTGAGCTCTACACCAATGGCCCTATTGAAGTCTCTTTCGAAGTTTTTGAGgtaaccgtctttatggatttaattttcctttccgggggataaaattgttggtaagttgcaggtatacttgtgcaactcgaatcgataccatagatactaggatactcatcagctttgtgagtgaaatcttctgtttcatctcttaaaggtagcgatctgaagtggtgaccacgcag
species | Physcomitrella patens |
transcript | PP1S79_128V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGAGCTCTACACCAATGGCCCTATTGAAGTCTCTTTCGAAGTTTTTGAG GACTTTGCACATTACAAAACTGGTGTGTACAAGCATGTGTACGGTCGTTACEST: gi|18341383|gb|BJ173418.1|BJ173418
genomic: CTGAGCTCTACACCAATGGCCCTATTGAAGTCTCTTTCGAAGTTTTTGAGgtaaccgtct ... gaccacgcagGACTTTGCACATTACAAAACTGGTGTGTACAAGCATGTGTACGGTCGTTAC
EST: CTGAGCTCTACACCAATGGCCCTATTGAAGTCTCTTTCGAAGTTTTTGAG GACTTTGCACATTACAAAACTGGTGTGTACAAGCATGTGTACGGTCGTTACEST: gi|37834041|gb|BJ592053.1|BJ592053
genomic: CTGAGCTCTACACCAATGGCCCTATTGAAGTCTCTTTCGAAGTTTTTGAGgtaaccgtct ... gaccacgcagGACTTTGCACATTACAAAACTGGTGTGTACAAGCATGTGTACGGTCGTTAC
EST: CTGAGCTCTACACCAATGGCCCTATTGAAGTCTCTTTCGAAGTTTTTGAG GACTTTGCACATTACAAAACTGGTGTGTACAAGCATGTGTACGGTCGTTACEST: gi|208363376|gb|DC946974.1|DC946974
genomic: CTGAGCTCTACACCAATGGCCCTATTGAAGTCTCTTTCGAAGTTTTTGAGgtaaccgtct ... gaccacgcagGACTTTGCACATTACAAAACTGGTGTGTACAAGCATGTGTACGGTCGTTAC
EST: CTGAGCTCTACACCAATGGCCCTATTGAAGTCTCTTTCGAAGTTTTTGAG GACTTTGCACATTACAAAACTGGTGTGTACAAGCATGTGTACGGTCGTTAC
genomic: CTGAGCTCTACACCAATGGCCCTATTGAAGTCTCTTTCGAAGTTTTTGAGgtaaccgtct ... gaccacgcagGACTTTGCACATTACAAAACTGGTGTGTACAAGCATGTGTACGGTCGTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTAGTGTGAATGCGTACGAGGTATCTAAGGAGCCTGAAGATCTTATGGCTGAGCTCTACACCAATGGCCCTATTGAAGTCTCTTTCGAAGTTTTTGAGgtaaccgtctttatggatttaattttcctttccgggggataaaattgttggtaagttgcaggtatacttgtgcaactcgaatcgataccatagatactaggatactcatcagctttgtgagtgaaatcttctgtttcatctcttaaaggtagcgatctgaagtggtgaccacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG