1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGCTCTCCCGGCAGTTCTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagagaacttggtttttcttgtctgctctctgtctgaaaaagttgcgcatgctctcagaaacatgttaatcagatgtatcaataatgtgtcagttt...
species | Physcomitrella patens |
transcript | PP1S795_4V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAAGAGAAACTGCCACGEST: gi|208368245|gb|DC951511.1|DC951511
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|208358641|gb|DC949976.1|DC949976
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|67696742|gb|BJ956975.1|BJ956975
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|208396541|gb|DC915853.1|DC915853
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|162221477|gb|FC397286.1|FC397286
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|67720059|gb|BJ970318.1|BJ970318
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|208362683|gb|DC947174.1|DC947174
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|162200943|gb|FC377346.1|FC377346
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|67695640|gb|BJ955873.1|BJ955873
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|67698195|gb|BJ958428.1|BJ958428
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|18334153|gb|BJ166169.1|BJ166169
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGTCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|162194335|gb|FC368518.1|FC368518
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|67572272|gb|BJ945096.1|BJ945096
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|37830194|gb|BJ588206.1|BJ588206
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|18335952|gb|BJ167973.1|BJ167973
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|18335829|gb|BJ167850.1|BJ167850
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACGEST: gi|37823009|gb|BJ581075.1|BJ581075
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
EST: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAG GCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
genomic: CTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagaga ... ggttgttcagGCCTCGCAGGATATTTCAGCCTTAAAAAACATGGCAGGAGAAACTGCCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGAGTGCTGCCTATTTTGACCGTGAAGAAGTTGGCTCTCCCGGCAGTTCTTCTATTGACGTTACGGCGAGTGAGCTCATGTCTAAACTCACATACCAGgtaatagagaacttggtttttcttgtctgctctctgtctgaaaaagttgcgcatgctctcagaaacatgttaatcagatgtatcaataatgtgtcagttt
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