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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAATTATGCAGTGTCTGGTGGTGTGAAGGGTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTgtgagtctcgttaacttcgtaggtcaccgtgacgtattcgtttggctatctctttcacctacatcacataatagaagagtaaagatgtcttaatcgcctatcataatgagatcacaccaatttatattttgtgtctgtaggtacgacttgcag

Basic information

species Physcomitrella patens
transcript PP1S40_304V6.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S40_304V6.2 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv06s0004g07380.t01 (Vitis vinifera), 5'ss of exon 7
GGCAATTATGCAGTGTCTGGTGGTGTGAAGGGTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTgtgagtctcgttaacttcgtaggtcaccgtgacgtattcgtttggctatctctttcacctacatcacataatagaagagtaaagatgtcttaatcgcctatcataatgagatcacaccaatttatattttgtgtctgtaggtacgacttgcag
|| ||||||||||| ||||| || ||||| || ||||||||  ||||||| |||||||||   ||||| || || ||||| ||   | || |||   |  |  |||    |||            || ||| ||| ||||  ||  || | || | | |       | ||||    |                                                         
GGGAATTATGCAGTCTCTGGAGGAGTGAAAGGAGTGGAAGCGGTTGAAGCTAAGGCTAAGTCATTCAAGGCCCGAATGACGgtatttttctttacagttttctgtc----tga-----------agccatc-cttccaccagcaagac-tcatggcacaacttttttctcttctcag---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37849990|gb|BJ607998.1|BJ607998
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37849990|gb|BJ607998.1|BJ607998
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37849990|gb|BJ607998.1|BJ607998
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37849990|gb|BJ607998.1|BJ607998
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37849990|gb|BJ607998.1|BJ607998
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|67723721|gb|BJ973980.1|BJ973980
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|67723721|gb|BJ973980.1|BJ973980
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|67723721|gb|BJ973980.1|BJ973980
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|67723721|gb|BJ973980.1|BJ973980
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|67723721|gb|BJ973980.1|BJ973980
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|208368882|gb|DC947440.1|DC947440
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACT                         G
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTgtgagtctcg ... cgacttgcag-
EST: gi|208368882|gb|DC947440.1|DC947440
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACT                         G
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTgtgagtctcg ... cgacttgcag-
EST: gi|37853106|gb|BJ611114.1|BJ611114
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37853106|gb|BJ611114.1|BJ611114
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37853106|gb|BJ611114.1|BJ611114
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37853106|gb|BJ611114.1|BJ611114
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37853106|gb|BJ611114.1|BJ611114
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37849955|gb|BJ607963.1|BJ607963
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37849955|gb|BJ607963.1|BJ607963
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37849955|gb|BJ607963.1|BJ607963
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37849955|gb|BJ607963.1|BJ607963
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37849955|gb|BJ607963.1|BJ607963
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162244729|gb|FC423474.1|FC423474
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162244729|gb|FC423474.1|FC423474
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162244729|gb|FC423474.1|FC423474
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162244729|gb|FC423474.1|FC423474
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162244729|gb|FC423474.1|FC423474
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37827977|gb|BJ585989.1|BJ585989
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37827977|gb|BJ585989.1|BJ585989
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37827977|gb|BJ585989.1|BJ585989
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37827977|gb|BJ585989.1|BJ585989
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37827977|gb|BJ585989.1|BJ585989
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162236151|gb|FC411959.1|FC411959
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162236151|gb|FC411959.1|FC411959
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162236151|gb|FC411959.1|FC411959
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162236151|gb|FC411959.1|FC411959
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162236151|gb|FC411959.1|FC411959
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162199394|gb|FC373735.1|FC373735
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162199394|gb|FC373735.1|FC373735
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162199394|gb|FC373735.1|FC373735
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162199394|gb|FC373735.1|FC373735
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162199394|gb|FC373735.1|FC373735
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37844058|gb|BJ602066.1|BJ602066
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37844058|gb|BJ602066.1|BJ602066
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37844058|gb|BJ602066.1|BJ602066
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37844058|gb|BJ602066.1|BJ602066
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|37844058|gb|BJ602066.1|BJ602066
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162265171|gb|FC441258.1|FC441258
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162265171|gb|FC441258.1|FC441258
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162265171|gb|FC441258.1|FC441258
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162265171|gb|FC441258.1|FC441258
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162265171|gb|FC441258.1|FC441258
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|208398755|gb|DC916278.1|DC916278
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACT                         G
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTgtgagtctcg ... cgacttgcag-
EST: gi|208398755|gb|DC916278.1|DC916278
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACT                         G
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTgtgagtctcg ... cgacttgcag-
EST: gi|208397540|gb|DC916410.1|DC916410
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|208397540|gb|DC916410.1|DC916410
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|208397540|gb|DC916410.1|DC916410
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|208397540|gb|DC916410.1|DC916410
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|208397540|gb|DC916410.1|DC916410
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162222330|gb|FC397129.1|FC397129
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162222330|gb|FC397129.1|FC397129
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162222330|gb|FC397129.1|FC397129
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162222330|gb|FC397129.1|FC397129
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg
EST: gi|162222330|gb|FC397129.1|FC397129
EST:     GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTGTACGACTT                 
genomic: GTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCG--T-A---T--GAC-Tgtgagtctcg ... cg

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAATTATGCAGTGTCTGGTGGTGTGAAGGGTGTGGAAGCACTTGAAGCCAAGGCTAAGAGTTTCAAAGCTCGTATGACTgtgagtctcgttaacttcgtaggtcaccgtgacgtattcgtttggctatctctttcacctacatcacataatagaagagtaaagatgtcttaatcgcctatcataatgagatcacaccaatttatattttgtgtctgtaggtacgacttgcag

- - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGC