1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgtattttatggatcgtgttggttcattttgtagaatcgaatttgaagtggagcttcgttgtagtgatcaatgaaaatttctcttttaattaagtcagtctgtttgtgcag
species | Physcomitrella patens |
transcript | PP1S227_66V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|19790555|gb|BQ041934.1|BQ041934
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCEST: gi|100388195|gb|BY951797.1|BY951797
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATC
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|162213332|gb|FC389620.1|FC389620
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|7286764|gb|AW599251.1|AW599251
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|100413212|gb|BY956563.1|BY956563
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|162243293|gb|FC415642.1|FC415642
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|162261369|gb|FC437802.1|FC437802
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|162262854|gb|FC439273.1|FC439273
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|162159195|gb|FC334366.1|FC334366
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: GCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|162267272|gb|FC442060.1|FC442060
genomic: GCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|162172982|gb|FC347892.1|FC347892
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|162258438|gb|FC434445.1|FC434445
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|100410814|gb|BY956200.1|BY956200
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|67727259|gb|BJ977518.1|BJ977518
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: AGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAANTTACAGAGCGATGGAGTTTEST: gi|19778198|gb|BQ039280.1|BQ039280
genomic: AGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACATAGCGATGGAGTTTEST: gi|162222838|gb|FC399300.1|FC399300
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTTEST: gi|19780614|gb|BQ039583.1|BQ039583
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCGATGGAGTTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTEST: gi|22492336|gb|BU052259.1|BU052259
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTT
EST: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAG ATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCG
genomic: TCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgt ... gtttgtgcagATTATCGGTGAAATATCTGTTGCAGGGGCAACTTACAGAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGTTAGCCAAGGATCTCATATTGCAGgtatggttgtattttatggatcgtgttggttcattttgtagaatcgaatttgaagtggagcttcgttgtagtgatcaatgaaaatttctcttttaattaagtcagtctgtttgtgcag
- - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - GGAGAA