Sequence
atgc intronic sequence ATGC exonic sequenceCAGTTCTTGCAAATATGGTTCAAATGCTGGCTGAGCAACCTTCTGTTCGCCTCCTCAAGCATATCATTCGATGCTATCTTCGACTTTCTGATAATCCGAGgtgagtacttttgggttcttttttctccttaggtaggtaaccagtaatgttttttcttaatgtatgtaattccgatcgagttttgtttttaccatgtagaagcttgggaatgcacctgtccttaatatctctgctggtcaaattatcacgtgcccatgtttttcactctgaacgtgaatttcgttccttgcag
Basic information
species | Physcomitrella patens |
transcript | PP1S15_262V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S15_262V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA18G10400.1 (Glycine max), 5'ss of exon 7
CAGTTCTTGCAAATATGGTTCAAATGCTGGCTGAGCAACCTTCTGTTCGCCTCCTCAAGCATATCATTCGATGCTATCTTCGACTTTCTGATAATCCGAGgtgagtacttttgggttcttttttctccttaggtaggtaaccagtaatgttttttcttaatgtatgtaattccgatcgagttttgtttttaccatgtagaagcttgggaatgcacctgtccttaatatctctgctggtcaaattatcacgtgcccatgtttttcactctgaacgtgaatttcgttccttgcag
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GAGTTCTGGGGAACATGGTGGCAGCTCTAGCTGAGCAACCCTCATCTCGTCTATTGAAGCATATCATTCGATGCTATCTTCGCCTGTCAGATAATCCAAGgt---------tggttactaatttacaactccatgcatgtttgttccttcttccacctaaactgcctcttgccatacataccctttttgt----tatcaattttcaaaactctaattg-----aatttcggt-ctggttaaaacag-----------------------------------------------
upper sequence: PP1S15_262V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GLYMA08G43220.1 (Glycine max), 5'ss of exon 7
CAGTTCTTGCAAATATGGTTCAAATGCTGGCTGAGCAACCTTCTGTTCGCCTCCTCAAGCATATCATTCGATGCTATCTTCGACTTTCTGATAATCCGAGgtgagtacttttgggttcttttttctccttaggtaggtaaccagtaatgttttttcttaatgtatgtaattccgatcgagttttgtttttaccatgtagaagcttgggaatgcacctgtccttaatatctctgctggtcaaattatcacgtgcccatgtttttcactctgaacgtgaatttcgttccttgcag
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GAGTTCTGGGGAACATGGTGGCAGCTCTCGCTGAGCAACCCTCATCTCGTCTATTGAAGCATATCATTCGATGCTATCTTCGCCTATCAGATAATCCAAGgttggt--tactaa---tttacaactccatgcatgtgtattccttcttcttcccttccacctaaactgcctcttgtcatacataccctttttgttatcaattttcaaaactctaattgaacttca-atct-----ggttaaaacag-----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37850874|gb|BJ608882.1|BJ608882EST: TGATAATCCGAG AGCGTGTGAAGCTTTGAAGAATTGTCTCCCTGAACTTCTTCAAAACGGCAC
genomic: TGATAATCCGAGgtgagtactt ... ttccttgcagAGCGTGTGAAGCTTTGAAGAATTGTCTCCCTGAACTTCTTCAAAACGGCAC
EST:
gi|37833386|gb|BJ591398.1|BJ591398EST: TTCGACTTTCTGATAATCCGAG AGCGTGTGAAGCTTTGAAGAATTGTCTCCCTGAACTTCTTCAAAACGGCAC
genomic: TTCGACTTTCTGATAATCCGAGgtgagtactt ... ttccttgcagAGCGTGTGAAGCTTTGAAGAATTGTCTCCCTGAACTTCTTCAAAACGGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGTTCTTGCAAATATGGTTCAAATGCTGGCTGAGCAACCTTCTGTTCGCCTCCTCAAGCATATCATTCGATGCTATCTTCGACTTTCTGATAATCCGAGgtgagtacttttgggttcttttttctccttaggtaggtaaccagtaatgttttttcttaatgtatgtaattccgatcgagttttgtttttaccatgtagaagcttgggaatgcacctgtccttaatatctctgctggtcaaattatcacgtgcccatgtttttcactctgaacgtgaatttcgttccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC