1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTATGGATATCATCTCAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAGgtgagtattgataccatttatcgtctcgtgtcaatttttcacccgttttatgatatcattatgataaaaacattttttgtggatgatggtaataccgaat...
species | Physcomitrella patens |
transcript | PP1S101_227V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAG GTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAGEST: gi|67696830|gb|BJ957063.1|BJ957063
genomic: CAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAGgtgagtattg ... gttattgcagGTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAG
EST: TCTCAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAG GTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAGEST: gi|208357815|gb|DC918605.1|DC918605
genomic: TCTCAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAGgtgagtattg ... gttattgcagGTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAG
EST: TCTCAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAG GTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAGEST: gi|208360244|gb|DC950217.1|DC950217
genomic: TCTCAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAGgtgagtattg ... gttattgcagGTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAG
EST: TCTCAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAG GTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAGEST: gi|67727706|gb|BJ977965.1|BJ977965
genomic: TCTCAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAGgtgagtattg ... gttattgcagGTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAG
EST: TCTCAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAG GTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAGEST: gi|2956936|gb|AJ225499.1|AJ225499
genomic: TCTCAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAGgtgagtattg ... gttattgcagGTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAG
EST: TCCAAGGATGAAGTGAAAAGATTCGAGAAAGAG GTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAG
genomic: TCCAAGGATGAAGTGAAAAGATTCGAGAAAGAGgtgagtattg ... gttattgcagGTAGAAGATGTGACGAAGAAGTACGTGAAGTCAGTCGAGGAAGCCTGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATGGATATCATCTCAAAAGGTGGATACTCCAAGGATGAAGTGAAAAGATTCGAGAAAGAGgtgagtattgataccatttatcgtctcgtgtcaatttttcacccgttttatgatatcattatgataaaaacattttttgtggatgatggtaataccgaat
- - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaacat