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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAAGGAGCAATACTTGACGGAACTGAAGGGATGATTGAGGCTTTCAATGCACTGCCACAACAAATCGGTCCATCAGTCATCGTTCAACTAACCGCAGgttagatcgatgcatggaaatcgtctttttaatcattttgctcttttatcatttggtaatttaaggagttggttgggtctcttacctctttttttagatt...

Basic information

species Physcomitrella patens
transcript PP1S9_350V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162237263|gb|FC413838.1|FC413838
EST:     TGCACTGCCACAACAAATCGGTCCATCAGTCATCGTTCAACTAACCGCAG                         GTACCAACCTATCTGATCGCAATAAAGGTTACACACACGGAGTTCTTGTGC
genomic: TGCACTGCCACAACAAATCGGTCCATCAGTCATCGTTCAACTAACCGCAGgttagatcga ... tttgagtcagGTACCAACCTATCTGATCGCAATAAAGGTTACACACACGGAGTTCTTGTGC
EST: gi|208355623|gb|DC929915.1|DC929915
EST:     TGCACTGCCACAACAAATCGGTCCATCAGTCATCGTTCA-CTAACCGCAG                         GTACCA-CCTATCTGATCGCAATAA
genomic: TGCACTGCCACAACAAATCGGTCCATCAGTCATCGTTCAACTAACCGCAGgttagatcga ... tttgagtcagGTACCAACCTATCTGATCGCAATAA
EST: gi|162242541|gb|FC414958.1|FC414958
EST:     TGCACTGCCACAACAAATCGGTCCATCAGTCATCGTTCAACTAACCGCAG                         GTACCAACCTATCTGATCGCAATAAAGGTTACACACAC
genomic: TGCACTGCCACAACAAATCGGTCCATCAGTCATCGTTCAACTAACCGCAGgttagatcga ... tttgagtcagGTACCAACCTATCTGATCGCAATAAAGGTTACACACAC
EST: gi|162158333|gb|FC334752.1|FC334752
EST:     TGCACTGCCACAACAAATCGGTCCATCAGTCATCGTTCAACTAACCGCAG                         GTACCAACCTATCTGATCGCAATAAAGGTTACACACACGGAGTTCTTGTGC
genomic: TGCACTGCCACAACAAATCGGTCCATCAGTCATCGTTCAACTAACCGCAGgttagatcga ... tttgagtcagGTACCAACCTATCTGATCGCAATAAAGGTTACACACACGGAGTTCTTGTGC