1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAAGGAGATGCGTGAATCCCAAGGGGGCCGAAATAGGGATGAGCGACAAAAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACTgtatgtgtatattgtcagcttttgatatgaccatgattgattatgctggagatgctaagcaacgatggcattcttacgttgttacattcgttatgctgaattttcttctctttttccag
species | Physcomitrella patens |
transcript | PP1S9_212V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACT GGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGGEST: gi|37838432|gb|BJ596440.1|BJ596440
genomic: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACTgtatgtgtat ... ctttttccagGGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGG
EST: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACT GGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGGEST: gi|162267094|gb|FC443325.1|FC443325
genomic: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACTgtatgtgtat ... ctttttccagGGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGG
EST: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACT GGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGGEST: gi|67697114|gb|BJ957347.1|BJ957347
genomic: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACTgtatgtgtat ... ctttttccagGGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGG
EST: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACT GGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGGEST: gi|18339738|gb|BJ171765.1|BJ171765
genomic: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACTgtatgtgtat ... ctttttccagGGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGG
EST: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACT GGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGGEST: gi|162235733|gb|FC411036.1|FC411036
genomic: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACTgtatgtgtat ... ctttttccagGGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGG
EST: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACT GGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGGEST: gi|162235732|gb|FC411035.1|FC411035
genomic: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACTgtatgtgtat ... ctttttccagGGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGG
EST: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACT GGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGGEST: gi|37846217|gb|BJ604225.1|BJ604225
genomic: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACTgtatgtgtat ... ctttttccagGGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGG
EST: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACT GGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGG
genomic: AAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACTgtatgtgtat ... ctttttccagGGCTGAGGCACAACGCCTACAGATGGAGGCTAAAGCTGCTGGAAGCAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGGAGATGCGTGAATCCCAAGGGGGCCGAAATAGGGATGAGCGACAAAAGAGGGAGCAAGCTCGTGAAGAGAAGGAGTTGGCTAGATTTGCTCAACTgtatgtgtatattgtcagcttttgatatgaccatgattgattatgctggagatgctaagcaacgatggcattcttacgttgttacattcgttatgctgaattttcttctctttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG