1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGCCATTGGAGAAGATATGGTACTAAGTTTAGTCTCGACGGATGATCAACAGAAGTACATGCGTTATCTATTAAGATCTTACGTGGAGGACAACCGAAAGgttaacaatctagtctgcctcaaattccgatccttcttgcttcgttctcacgcatggaatagaatgttggccttcattgtgcatccgtgtaattatttttatgtttcatgctggcagaagcttgttagtaagggtaatggtctgacatgaaggttgcgtaatgtgatttagcag
species | Physcomitrella patens |
transcript | PP1S9_199V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAAGTACATGCGTTATCTATTAAGATCTTACGTGGAGGACAACCGAAAGCAGEST: gi|162156717|gb|FC333560.1|FC333560
genomic: AGAAGTACATGCGTTATCTATTAAGATCTTACGTGGAGGACAACCG-AA--AGgttaacaatc ... gatttagc
EST: AGAAGTACATGCGTTATCTATTAAGATCTTACGTGGAGGACAACCGAAAG GTCAAGTGGTGCCCAGCACCTGGCTGTGAATATGCTGTGGAATTTCAACCTEST: gi|162179661|gb|FC355719.1|FC355719
genomic: AGAAGTACATGCGTTATCTATTAAGATCTTACGTGGAGGACAACCGAAAGgttaacaatc ... gatttagcagGTCAAGTGGTGCCCAGCACCTGGCTGTGAATATGCTGTGGAATTTCAACCT
EST: AGAAGTACATGCGTTATCTATTAAGATCTTACGTGGAGGACAACCGAAAG GTCAAGTGGTGCCCAGCACCTGGCTGTGAATATGCTGTGGAATTTCAACCT
genomic: AGAAGTACATGCGTTATCTATTAAGATCTTACGTGGAGGACAACCGAAAGgttaacaatc ... gatttagcagGTCAAGTGGTGCCCAGCACCTGGCTGTGAATATGCTGTGGAATTTCAACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCATTGGAGAAGATATGGTACTAAGTTTAGTCTCGACGGATGATCAACAGAAGTACATGCGTTATCTATTAAGATCTTACGTGGAGGACAACCGAAAGgttaacaatctagtctgcctcaaattccgatccttcttgcttcgttctcacgcatggaatagaatgttggccttcattgtgcatccgtgtaattatttttatgtttcatgctggcagaagcttgttagtaagggtaatggtctgacatgaaggttgcgtaatgtgatttagcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA