1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCCAAGGATGCCCGTCCACAATACTCTTCAGCTGACGTAATATATTCTTCTCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATCgtaactccctcaacttcaacaaactagcagatttgtgtcttttaatctgttgcaagcaaattccagttcttgtttatttattcatttatttattttttcgttaagcaatcaaggcaactgttgcag
species | Physcomitrella patens |
transcript | PP1S79_94V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATC GAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTAEST: gi|67696608|gb|BJ956841.1|BJ956841
genomic: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATCgtaactccct ... actgttgcagGAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTA
EST: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATC GAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTAEST: gi|162214903|gb|FC390463.1|FC390463
genomic: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATCgtaactccct ... actgttgcagGAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTA
EST: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATC GAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTAEST: gi|100356058|gb|BY946175.1|BY946175
genomic: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATCgtaactccct ... actgttgcagGAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTA
EST: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATC GAATTGGTGGCGCTATACCTATAGAGCCATGGTACEST: gi|208360015|gb|DC939319.1|DC939319
genomic: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATCgtaactccct ... actgttgcagGAATTGGTGGCGCTATACCTATAGAGCCATGGTAC
EST: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAA-TGATC GAATTGGTGGCGCTATACCTATAGAGC-ATGGTACATGGGTGGGCCAGTTAEST: gi|208360201|gb|DC939198.1|DC939198
genomic: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATCgtaactccct ... actgttgcagGAATTGGTGGCGCTATACCTATAGAGCCATGGTACATGGGTGGGCCAGTTA
EST: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATC NAATTGGTGGCGCTATACCTATAGAGC
genomic: TCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATCgtaactccct ... actgttgcagGAATTGGTGGCGCTATACCTATAGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAAGGATGCCCGTCCACAATACTCTTCAGCTGACGTAATATATTCTTCTCTGTTGGATTTTCAGCCTGAAGTCTGGGGCTTCCCCTCTCTAAATGATCgtaactccctcaacttcaacaaactagcagatttgtgtcttttaatctgttgcaagcaaattccagttcttgtttatttattcatttatttattttttcgttaagcaatcaaggcaactgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG