1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCGATGATGTGAATGTAGAGGTATTGACAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTGgtaagatttatgtatcgttatttcgcttcttttctttgtgcttgcactacatattgtataagtcttttttttcgacattattgatagtgagaattattca...
species | Physcomitrella patens |
transcript | PP1S79_254V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTG GAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAAACAEST: gi|162269550|gb|FC445106.1|FC445106
genomic: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTGgtaagattta ... tatcattcagGAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAAACA
EST: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTG GAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAAACAEST: gi|208381754|gb|DC928417.1|DC928417
genomic: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTGgtaagattta ... tatcattcagGAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAAACA
EST: CAAACTTGGATACTGNTNATATACACACTGAAGTATCCGAACAAGACTTG GAGTTTGTGTTTATGAGCGCATCGTANGACTTGAACGAGGACTCTAGAACAEST: gi|100361020|gb|BY946873.1|BY946873
genomic: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTGgtaagattta ... tatcattcagGAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAAACA
EST: CAAACTTGGATACTGCTAATATACACACTGGAGTATCGGAACAAGACTTG NAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAEST: gi|100447492|gb|CJ971791.1|CJ971791
genomic: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTGgtaagattta ... tatcattcagGAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAA
EST: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTG GAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAEST: gi|100362688|gb|BY947478.1|BY947478
genomic: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTGgtaagattta ... tatcattcagGAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGA
EST: AA-CTTGGATACTGCTAATATACACACTGAAGTATCCCGAACA-GACTTG GAGTTNGTGTTTATGAGCGCATCCTACGACTTTGA-CGAGGACTCTAAAACEST: gi|162192867|gb|FC369354.1|FC369354
genomic: AAACTTGGATACTGCTAATATACACACTGAAGTATCC-GAACAAGACTTGgtaagattta ... tatcattcagGAGTTTGTGTTTATGAGCGCATCCTACGACTT-GAACGAGGACTCTAAAAC
EST: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTG GAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAAACAEST: gi|162162092|gb|FC338883.1|FC338883
genomic: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTGgtaagattta ... tatcattcagGAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAAACA
EST: ATATACACACTGAAGTATCCGAACAAGACTTG GAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAAACAEST: gi|162192772|gb|FC369623.1|FC369623
genomic: ATATACACACTGAAGTATCCGAACAAGACTTGgtaagattta ... tatcattcagGAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAAACA
EST: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTG GAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAAACA
genomic: CAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTGgtaagattta ... tatcattcagGAGTTTGTGTTTATGAGCGCATCCTACGACTTGAACGAGGACTCTAAAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGATGATGTGAATGTAGAGGTATTGACAAACTTGGATACTGCTAATATACACACTGAAGTATCCGAACAAGACTTGgtaagatttatgtatcgttatttcgcttcttttctttgtgcttgcactacatattgtataagtcttttttttcgacattattgatagtgagaattattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG