1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTTGAGTGGTTGGCTGGGCTGTCTAAGAGCATGCACGTCATTGTTGGGAATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTCAGAGCAGgtcggagtttgcccatcgtgatcattttttcgtttctccttttcgttttgttacattccgatcaattcaatacattgtactgtggaggtgaaatagtagtgatagaagttattcaacgacttgcaactgacttcgaagccttgttctgaagcttctcag
species | Physcomitrella patens |
transcript | PP1S79_213V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTCAGAGCAG TATGAAGAGGCGTTTAAACTGAAGCAAGCACTGGCGGATCACGACACTTGCEST: gi|18334236|gb|BJ166252.1|BJ166252
genomic: ATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTCAGAGCAGgtcggagttt ... agcttctcagTATGAAGAGGCGTTTAAACTGAAGCAAGCACTGGCGGATCACGACACTTGC
EST: ATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTCAGAGCAG TATGAAGAGGCGTTTAAACTGAAGCAAGCACTGGCGGATCACGACACTTGCEST: gi|162151061|gb|FC326878.1|FC326878
genomic: ATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTCAGAGCAGgtcggagttt ... agcttctcagTATGAAGAGGCGTTTAAACTGAAGCAAGCACTGGCGGATCACGACACTTGC
EST: ATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTCAGAGCAG TATGAAGAGGCGTTTAAACTGAAGCAAGCACTGGCGGATCACGACACTTGCEST: gi|162167008|gb|FC342470.1|FC342470
genomic: ATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTCAGAGCAGgtcggagttt ... agcttctcagTATGAAGAGGCGTTTAAACTGAAGCAAGCACTGGCGGATCACGACACTTGC
EST: ATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTCAGAGCAG TATGAAGAGGCGTTTAAACTGAAGCAAGCACTGGCGGATCACGACACTTGCEST: gi|67725887|gb|BJ976146.1|BJ976146
genomic: ATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTCAGAGCAGgtcggagttt ... agcttctcagTATGAAGAGGCGTTTAAACTGAAGCAAGCACTGGCGGATCACGACACTTGC
EST: ATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTCAGAGCAGCTTCTCAG
genomic: ATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTC--AG-AG-----CAGgtcggagttt ... agc
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGAGTGGTTGGCTGGGCTGTCTAAGAGCATGCACGTCATTGTTGGGAATCAAGCACGATTGCAAGCAGCCCTAAAATCTGCCGTGGAGTCAGAGCAGgtcggagtttgcccatcgtgatcattttttcgtttctccttttcgttttgttacattccgatcaattcaatacattgtactgtggaggtgaaatagtagtgatagaagttattcaacgacttgcaactgacttcgaagccttgttctgaagcttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG