Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGgtgagtctttacatattctgatatttcattgccttctgccctggacgtgtttaggaagttcatcagtccagccgcgctagtgtttcgttctacagggatg...

Basic information

species Physcomitrella patens
transcript PP1S54_156V6.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100401870|gb|BY954751.1|BY954751
EST:     GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG                         GAACTACTTTGCGTTGTGACGTGACTGGCAAGATTTTAATGAAGTGCTTCC
genomic: GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGgtgagtcttt ... ggtgttgcagGAACTACTTTGCGTTGTGACGTGACTGGCAAGATTTTAATGAAGTGCTTCC
EST: gi|162233608|gb|FC409367.1|FC409367
EST:     GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG                         GAACTACTTTGCGTTGTGACGTGACTGGCAAGATTTTAATGAAGTGCTTCC
genomic: GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGgtgagtcttt ... ggtgttgcagGAACTACTTTGCGTTGTGACGTGACTGGCAAGATTTTAATGAAGTGCTTCC
EST: gi|208385555|gb|DC937100.1|DC937100
EST:     GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCANAAAG                         GAACTACTTTGCGTTGTGACGTGACTGGCAAGATTTTAATGAAGTGCTTCC
genomic: GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGgtgagtcttt ... ggtgttgcagGAACTACTTTGCGTTGTGACGTGACTGGCAAGATTTTAATGAAGTGCTTCC
EST: gi|162178167|gb|FC354885.1|FC354885
EST:     GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG                         GAACTACTTTGCGTTGTGACGTGACTGGCAAGATTTTAATGAAGTGCTTCC
genomic: GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGgtgagtcttt ... ggtgttgcagGAACTACTTTGCGTTGTGACGTGACTGGCAAGATTTTAATGAAGTGCTTCC
EST: gi|67578518|gb|BJ950685.1|BJ950685
EST:     GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAG                         GAACTACTTTGCGTTGTGACGTGACTGGCAAGATTTTAATGAAGTGCTTCC
genomic: GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGgtgagtcttt ... ggtgttgcagGAACTACTTTGCGTTGTGACGTGACTGGCAAGATTTTAATGAAGTGCTTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTTTCTCGATATTGTGGAAAGTGTCAATCTCCTCATGTCTCAGAAAGgtgagtctttacatattctgatatttcattgccttctgccctggacgtgtttaggaagttcatcagtccagccgcgctagtgtttcgttctacagggatg

- - - - - - - - - - - - - - - CTCCTC