1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GACACTTCAAGGGTTTCGCACGAGCAAGTTCAGTGTTCTGGTTGCAACGGATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcacttcgaatgcactttagatgttcttggcgcatgtaactttctctgtctggtagagaatcgtattgctggatgtcgtcactgatcgttttgatcgctactctattgttatttggcag
species | Physcomitrella patens |
transcript | PP1S40_169V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACAEST: gi|162183859|gb|FC360165.1|FC360165
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACA
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACAEST: gi|162199364|gb|FC374030.1|FC374030
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACA
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACAEST: gi|162162672|gb|FC338974.1|FC338974
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACA
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACAEST: gi|162157788|gb|FC334059.1|FC334059
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACA
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACAEST: gi|162165912|gb|FC341262.1|FC341262
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACA
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACAEST: gi|162201473|gb|FC377407.1|FC377407
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACA
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCEST: gi|162187537|gb|FC363799.1|FC363799
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGC
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACAEST: gi|162185256|gb|FC361766.1|FC361766
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACA
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACAEST: gi|162167302|gb|FC342290.1|FC342290
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACA
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCEST: gi|162163230|gb|FC339348.1|FC339348
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGC
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACEST: gi|162168031|gb|FC344345.1|FC344345
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGAC
EST: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAG TGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACA
genomic: ATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcact ... tatttggcagTGTGAACCTCCTCGTGATGCCGAAACCTACATCCATCGGTCTGGGCGGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACACTTCAAGGGTTTCGCACGAGCAAGTTCAGTGTTCTGGTTGCAACGGATGTGGCCGCCAGAGGATTAGACATCAATGACGTTCAGTTGGTGATTCAGgtacttcacttcgaatgcactttagatgttcttggcgcatgtaactttctctgtctggtagagaatcgtattgctggatgtcgtcactgatcgttttgatcgctactctattgttatttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT