1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGACAAGGCGGCGAACGCAGTGGCATTGGCAACTAGTCCAGTTGTGCGAGCGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatgattttatgcagctttgtagattcttctaaattggttctttcgattgtaaatgtgctcctttgtaagaaacataggaatgccagatagaaga...
species | Physcomitrella patens |
transcript | PP1S277_10V6.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162165520|gb|FC340631.1|FC340631
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162155413|gb|FC332027.1|FC332027
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162150291|gb|FC326376.1|FC326376
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|18327722|gb|BJ159725.1|BJ159725
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162151154|gb|FC327153.1|FC327153
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162198693|gb|FC373474.1|FC373474
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162167140|gb|FC343616.1|FC343616
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162159709|gb|FC336095.1|FC336095
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162167477|gb|FC344194.1|FC344194
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162230035|gb|FC405975.1|FC405975
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162168664|gb|FC343926.1|FC343926
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162170376|gb|FC346781.1|FC346781
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162267926|gb|FC444007.1|FC444007
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATCEST: gi|162166539|gb|FC343236.1|FC343236
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
EST: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAG GTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
genomic: CGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatga ... aaatgaacagGTGAGTTTCTCTGATTGGTTCATTTCTCATGGCGGAACTCGCATGAGTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACAAGGCGGCGAACGCAGTGGCATTGGCAACTAGTCCAGTTGTGCGAGCGTTGGTCGATCCTGAGGGGGCTATGCGTGATATCCGGGACTTGGATAAGgtaacaatgattttatgcagctttgtagattcttctaaattggttctttcgattgtaaatgtgctcctttgtaagaaacataggaatgccagatagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaca