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TTCCCACACTTGCAATGCTGGAGCGTTTGGTCAGTTTGCAACAGGGATCGGTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttgatagttcaaatttgtggctcgatgtgaatatttaaggtagggcaatttcatacgactgacatagttgtagtggacatttgccacgccacat...
species | Physcomitrella patens |
transcript | PP1S227_66V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|19790555|gb|BQ041934.1|BQ041934
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|100388195|gb|BY951797.1|BY951797
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|162213332|gb|FC389620.1|FC389620
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|7286764|gb|AW599251.1|AW599251
genomic: GCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|100413212|gb|BY956563.1|BY956563
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|162243293|gb|FC415642.1|FC415642
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: AGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|162261369|gb|FC437802.1|FC437802
genomic: AGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|100364743|gb|BY947886.1|BY947886
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: TAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCCTGATTAAG GTCCCACCA-CGTTGAGGTTTGTGCTCGATGGEST: gi|162172982|gb|FC347892.1|FC347892
genomic: TAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCC-TGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|162199219|gb|FC375055.1|FC375055
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|162258438|gb|FC434445.1|FC434445
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|100410814|gb|BY956200.1|BY956200
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|162198077|gb|FC372104.1|FC372104
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGEST: gi|100362852|gb|BY947561.1|BY947561
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTG
EST: TAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAANG GT-CCACCNACGNTGAGGTTTGTGCTCGAEST: gi|19778198|gb|BQ039280.1|BQ039280
genomic: TAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAA-Ggtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGA
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|162222838|gb|FC399300.1|FC399300
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|19780614|gb|BQ039583.1|BQ039583
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTGEST: gi|22492336|gb|BU052259.1|BU052259
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
EST: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAG GTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
genomic: GTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttga ... cttcctacagGTTCCACCAACGTTGAGGTTTGTGCTCGATGGAGAAATGCCAAAGTACCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCCACACTTGCAATGCTGGAGCGTTTGGTCAGTTTGCAACAGGGATCGGTAACACTGATGCAGGCTTTATTATGGGCACCGGCAAGCTCCTGATTAAGgtacagttgatagttcaaatttgtggctcgatgtgaatatttaaggtagggcaatttcatacgactgacatagttgtagtggacatttgccacgccacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT