1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTGCAGCTTACGATAAGACACAGAGTCAGATGGCATTCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAGgtgtgtggtacttgcttcaagtattttctctgctccgtgtctttattcccttctttctttggaagttaaaagttctaaacattttccttcggcttgtgcaatgcctacgtag
species | Physcomitrella patens |
transcript | PP1S166_97V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAG ATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGCEST: gi|37842990|gb|BJ600998.1|BJ600998
genomic: GATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAGgtgtgtggta ... gcctacgtagATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGC
EST: TCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAG ATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGCEST: gi|67725625|gb|BJ975884.1|BJ975884
genomic: TCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAGgtgtgtggta ... gcctacgtagATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGC
EST: TCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAG ATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGCEST: gi|162165340|gb|FC340828.1|FC340828
genomic: TCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAGgtgtgtggta ... gcctacgtagATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGC
EST: TCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAG ATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGCEST: gi|22492199|gb|BU052122.1|BU052122
genomic: TCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAGgtgtgtggta ... gcctacgtagATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGC
EST: TCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAG ATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGCEST: gi|37836042|gb|BJ594050.1|BJ594050
genomic: TCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAGgtgtgtggta ... gcctacgtagATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGC
EST: TCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAG ATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGC
genomic: TCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAGgtgtgtggta ... gcctacgtagATGCGCAACTTCGCAAAGAGCAACGAGTTGCCACCAGATGGGTTCATGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCAGCTTACGATAAGACACAGAGTCAGATGGCATTCTTCGATCCATCTAGGGCGCAAGATTTTCTCTTTATTTCTGGAACTAAGgtgtgtggtacttgcttcaagtattttctctgctccgtgtctttattcccttctttctttggaagttaaaagttctaaacattttccttcggcttgtgcaatgcctacgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA