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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACATATTCTTCACTAATAGAGCAGGAGTTCGGAACCCTGAATCTTTGACATTCGGTATAGACGATGAGGCTGTATTGGACAGCCGGACTGCCCTTGAGgttgtggcctctcttactcagatctccccctcaattccaactttccctacagtcgccagtgtattctagattccggcggtcacctagtttgtttcagtct...

Basic information

species Physcomitrella patens
transcript PP1S9_318V6.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162160287|gb|FC336573.1|FC336573
EST:     CATTCGGTATAGACGATGAGGCTGTATTGGACAGCCGGACTGCCCTTGAG                         GTGTATTACGATTTTATGGAAAGCTTTAGGAAGGATATG
genomic: CATTCGGTATAGACGATGAGGCTGTATTGGACAGCCGGACTGCCCTTGAGgttgtggcct ... ccttaattagGTGTATTACGATTTTATGGAAAGCTTTAGGAAGGATATG
EST: gi|162237715|gb|FC413330.1|FC413330
EST:     CATTCGGTATAGACGATGAGGCTGTATTGGACAGCCGGACTGCCCTTGAG                         GTGTATTACGATTTTATGGAAAGCTTTAGGAAGGATATGGAAGAGTTCCTG
genomic: CATTCGGTATAGACGATGAGGCTGTATTGGACAGCCGGACTGCCCTTGAGgttgtggcct ... ccttaattagGTGTATTACGATTTTATGGAAAGCTTTAGGAAGGATATGCAAGAGTTCCTG