1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTGTGCACCGGCTTGGATCCCTTCGAAATATTGAAAAATTGAATGACTTTCTCCAGGAGAATGGCATCAAGCTCAACAGTGAAGGAGGCATATTGAAAGgtaacttcgcaaaactcgtgatttggaggctggatctttttggcagaggacgacgatactgacgttcgtcttttggttgatcag
species | Physcomitrella patens |
transcript | PP1S79_21V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCTCCAGGAGAATGGCATCAAGCTCAACAGTGAAGGAGGCATATTGAAAG TCGGTCCAGACGGTGGACTGCAGCAGAGCTCATCGGTTGCTGATACAGTGAEST: gi|18336374|gb|BJ168396.1|BJ168396
genomic: TCTCCAGGAGAATGGCATCAAGCTCAACAGTGAAGGAGGCATATTGAAAGgtaacttcgc ... ggttgatcagTCAGTCCAGACGGTGGACTGCAGCAGAGCTCATCGGTTGCTGATACAGTGA
EST: TCTCCAGGAGAATGGCATCAAGCTCAACAGTGAAGGAGGCATATTGAAAG TCAGTCCAGACGGTGGACTGCAGCAGAGCTCATCGGTTGCTGATACAGTGAEST: gi|208369857|gb|DC944237.1|DC944237
genomic: TCTCCAGGAGAATGGCATCAAGCTCAACAGTGAAGGAGGCATATTGAAAGgtaacttcgc ... ggttgatcagTCAGTCCAGACGGTGGACTGCAGCAGAGCTCATCGGTTGCTGATACAGTGA
EST: TCTCCAGGAGAATGGCATCAAGCTCAACAGTGAAGGAGGCATATTGAAAG TCAGTCCAGACGGTGGACTGCAGCAGAGCTCATCGGTTGCTGATACAGTGA
genomic: TCTCCAGGAGAATGGCATCAAGCTCAACAGTGAAGGAGGCATATTGAAAGgtaacttcgc ... ggttgatcagTCAGTCCAGACGGTGGACTGCAGCAGAGCTCATCGGTTGCTGATACAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGTGCACCGGCTTGGATCCCTTCGAAATATTGAAAAATTGAATGACTTTCTCCAGGAGAATGGCATCAAGCTCAACAGTGAAGGAGGCATATTGAAAGgtaacttcgcaaaactcgtgatttggaggctggatctttttggcagaggacgacgatactgacgttcgtcttttggttgatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG