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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAGgtacgttgtttgagaccatgtttatccgtccgttccatggttcagctgtcattgtagtagtcactcgcgagttttattacagtcgtcactcacagtgcatctttctgtgtttagctgttctctattttgaaaccatcacttgaaagtgctgagaggagttcatctcgttctgttttctgcag

Basic information

species Physcomitrella patens
transcript PP1S79_180V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18345941|gb|BJ177984.1|BJ177984
EST:     AGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAG                         TGCGATCAGCGAAGTTTATCCCCCGTAAGCAGTGGGTTGTGGCTTGCTCTG
genomic: AGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAGgtacgttgtt ... ttttctgcagTGCGATCAGCGAAGTTTATCCCCCGTAAGCAGTGGGTTGTGGCTTGCTCTG
EST: gi|18374691|gb|BJ206269.1|BJ206269
EST:     AGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAG                         TGCGATCAGCGAAGTTTATCCCCCGTAAGCAGTGGGTTGTGGCTTGCTCTG
genomic: AGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAGgtacgttgtt ... ttttctgcagTGCGATCAGCGAAGTTTATCCCCCGTAAGCAGTGGGTTGTGGCTTGCTCTG
EST: gi|18366204|gb|BJ198282.1|BJ198282
EST:     AGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAG                         TGCGATCAGCGAAGTTTATCCCCCGTAAGCAGTGGGTTGTGGCTTGCTCTG
genomic: AGCCTGGTGAAGTCTTTCGAGGTTACCGACCTGCCAGgtacgttgtt ... ttttctgcagTGCGATCAGCGAAGTTTATCCCCCGTAAGCAGTGGGTTGTGGCTTGCTCTG