1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGTGCACTGCAAAGATGAACTTAAGCGAGGAAGTTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatcctaccattatgaccactctcattcctgcagaagctatatggggatgtatatacccacatatacacatatgttggatgggttagaaatagc...
species | Physcomitrella patens |
transcript | PP1S79_171V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCCGGTATGCATGCAGTACGGAAGAATCGTEST: gi|18339313|gb|BJ171340.1|BJ171340
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGTEST: gi|162254098|gb|FC429622.1|FC429622
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGTEST: gi|208380173|gb|DC927452.1|DC927452
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGTEST: gi|208383487|gb|DC923639.1|DC923639
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGTEST: gi|37838326|gb|BJ596334.1|BJ596334
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGTEST: gi|208385418|gb|DC953065.1|DC953065
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGTEST: gi|67701226|gb|BJ961459.1|BJ961459
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGTEST: gi|37850846|gb|BJ608854.1|BJ608854
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGTEST: gi|208396378|gb|DC920058.1|DC920058
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGTEST: gi|67578343|gb|BJ950510.1|BJ950510
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGTEST: gi|37828181|gb|BJ586193.1|BJ586193
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
EST: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAG ATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
genomic: TTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatc ... ttgcttgcagATTTCCGCTATTTGTCAGGAGGCTGGTATGCATGCAGTACGGAAGAATCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGCACTGCAAAGATGAACTTAAGCGAGGAAGTTGATCTCGAAGACTATGTCTCGAGGCCCGACAAGATCAGTGCTGCAGAGgtgtgttatcctaccattatgaccactctcattcctgcagaagctatatggggatgtatatacccacatatacacatatgttggatgggttagaaatagc
- - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG