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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGCAAGATCGAAGCATTGTAGCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgttcaatccatatgtgttattttctacttcttagtaccctaggcaataatctcataatctttcatctgcgcaattgttcattttgcgttcaaattttcatatttctttttactggcaacatatgcgttatgttgaatggcagcacttgttgatccaaatgcttctgagacatgaaattgtgtgaggtgccag

Basic information

species Physcomitrella patens
transcript PP1S78_8V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S78_8V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT3G04970.1 (Arabidopsis thaliana), 5'ss of exon 5
GCCTGCAAGATCGAAGCATTGTAGCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgttcaatcc--atatgtgttattttctacttcttagtaccctaggcaataatctcataatctttcatctgcgcaattgttcattttgcgttcaaattttcatatttctttttactggcaacatatgcgttatgttgaatggcagcacttgttgatccaaatgcttctgagacatgaaattgtgtgaggtgccag
|||||| ||||| |||||||| ||||||||||||   || |||||||| |||||||| |||||||  ||||||||  ||  ||    ||  || | |||    || | ||| |     |   |    ||||   |||| | ||| |  ||   | || |  |    |  ||||                                                                                                     
GCCTGCTAGATCCAAGCATTGCAGCATCTGCAACCGCTGTGTGGCTCGGTTTGATCATCATTGTGGGTGGATGgtatgtactttgcccctgatctctgtctcgtttttcttatcttctcaacatttcataacaacatattgtttgacgtgaatatttctctacc--ggtttcag----------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208385167|gb|DC923561.1|DC923561
EST:     GCATNTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTNTCTTGGC
genomic: GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
EST: gi|162167447|gb|FC343150.1|FC343150
EST:     GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
genomic: GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
EST: gi|162167446|gb|FC343149.1|FC343149
EST:     GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
genomic: GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
EST: gi|208390790|gb|DC938383.1|DC938383
EST:     GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
genomic: GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
EST: gi|208373870|gb|DC956344.1|DC956344
EST:     GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
genomic: GCATCTGCAACAAATGCGTGGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC
EST: gi|208366945|gb|DC951432.1|DC951432
EST:     GGCTCGTTTTGATCACCATTGTGCCTGGATG                         AATAACTGCATTGGTGAAGNCAATCTGCGATATTTTTTGTCGTTTCTTGGC
genomic: GGCTCGTTTTGATCACCATTGTGCCTGGATGgttagtcgtt ... gaggtgccagAATAACTGCATTGGTGAAGGCAATCTGCGATATTTTTTGTCGTTTCTTGGC