1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATCAAGAGCAAACTCGATCCTGCGGAATTTGGTGATCCCACCTCTGCCATCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgagccgacttcgaatcgttcaatgtggatttgtttggttgtggctcaactaccggagtgtgtcacagtcctgtttgcaaacaaataattgtttattgttttctttttcgctttcctttaccgggacgatgcgcgcag
species | Physcomitrella patens |
transcript | PP1S419_7V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162256614|gb|FC432924.1|FC432924
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162158128|gb|FC333923.1|FC333923
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: AATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162249202|gb|FC421545.1|FC421545
genomic: AATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162270721|gb|FC446334.1|FC446334
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162178773|gb|FC354510.1|FC354510
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162164877|gb|FC341366.1|FC341366
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: CTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162180667|gb|FC357024.1|FC357024
genomic: CTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: GGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162256588|gb|FC432898.1|FC432898
genomic: GGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|67701793|gb|BJ962026.1|BJ962026
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162256626|gb|FC432936.1|FC432936
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAN GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162165033|gb|FC342224.1|FC342224
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162188009|gb|FC364999.1|FC364999
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162173204|gb|FC349986.1|FC349986
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: CACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162240726|gb|FC416318.1|FC416318
genomic: CACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162245537|gb|FC423272.1|FC423272
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|100388490|gb|BY952092.1|BY952092
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|100386918|gb|BY988187.1|BY988187
genomic: TGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162154367|gb|FC330706.1|FC330706
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162167824|gb|FC344554.1|FC344554
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162200069|gb|FC376531.1|FC376531
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTCEST: gi|162168254|gb|FC344984.1|FC344984
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
EST: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAG GCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
genomic: TCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgag ... atgcgcgcagGCCGTGTCCGAGAAGAAGCTTTTTGTGGTGGACTTTCACGATCTTTTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCAAGAGCAAACTCGATCCTGCGGAATTTGGTGATCCCACCTCTGCCATCACTGAGCAACACATTGACGCCAAATTGGAAGGTCTCAGCGTCGCGCAGgtaccgtgagccgacttcgaatcgttcaatgtggatttgtttggttgtggctcaactaccggagtgtgtcacagtcctgtttgcaaacaaataattgtttattgttttctttttcgctttcctttaccgggacgatgcgcgcag
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