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TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctctaactgttattacaagattgttttctttctcgacacacttagtcgctttggttgagatcaacgataatgtgaggaatgtaataacctcct...
species | Physcomitrella patens |
transcript | PP1S341_73V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|100406162|gb|BY991570.1|BY991570
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: NAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAANAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|162185274|gb|FC361784.1|FC361784
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|162173953|gb|FC349753.1|FC349753
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|162187116|gb|FC362898.1|FC362898
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|162158810|gb|FC335333.1|FC335333
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|100435045|gb|BY979058.1|BY979058
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|100446505|gb|CJ970804.1|CJ970804
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|162165683|gb|FC342250.1|FC342250
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|162193527|gb|FC370430.1|FC370430
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|162171492|gb|FC346767.1|FC346767
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|67568954|gb|BJ941778.1|BJ941778
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTCEST: gi|162157215|gb|FC332849.1|FC332849
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
EST: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGA GTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
genomic: AAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctc ... catggtgcagGTCCTAGTTCCCATTCCACAATATCCTCTATACTCTGCAACAATTCAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATCCGGAGAATATCTTCCTCACTGATGGAGCTAGCAAAGGGGTTGCACAAGTTTTGAATGCCCTCATCCGTGATGAAAAAGATGGAgtaatttctctaactgttattacaagattgttttctttctcgacacacttagtcgctttggttgagatcaacgataatgtgaggaatgtaataacctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA