Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTGGAGTATTTGAATGGTCAGGAAACAATCCCCTGCCTCCTGAAACTTGGATACTGCCGTATTTTCTTCCTATGCATCCAGgtgcactacatcacatctttatgcaatttcttcaagatatttatcgtaccacattgttcgcatcggcatgattgaaatgccgatgcctggatcagaactg...

Basic information

species Physcomitrella patens
transcript PP1S33_211V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S33_211V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv11s0065g00640.t01 (Vitis vinifera), 5'ss of exon 6
GTTCTTGGAGTATTTGAATGGTCAGGAAACAATCCCCTGCCTCCTGAAACTTGGATACTGCCGTATTTTCTTCCTATGCATCCAGgt-gcactacatcacatctttatgcaatttcttcaagatatttatcgtaccacattgttcgcatcggcatgattgaaatgccgatgcctggatcagaactg--
|| |||||||||||||||||||| || || ||||| ||||| |||||||  ||| | || || ||| | || ||  | ||||||||| ||    |||    | ||| |    | | |  |  |||||   |  || | |   ||   | |  | || ||   ||    | |  ||||  ||  |    
GTACTTGGAGTATTTGAATGGTCTGGCAATAATCCTCTGCCCCCTGAAATATGGCTTCTTCCCTATATCCTACCAGTCCATCCAGgttgcttctcattttgtatttttttt-tctttctagaatattggactgactaaaacctttata-catcctgttttggat-ttaaagattggactagtcccata