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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGGCAGAATGAGGAGTTGGCGACGGATGCACTTTCTATTCATGGCTATGAGCATTACAAAGCTAAAGACTACGTCCTTGCTCATGCTCCTTTTATTGgtgcgtttgtctcacaacttttccaggatgattgtgccaaagtagtaactgtgaggctggagctgtgtgagtacgatttaggatgtattttattttgatttactcatgttgtatcagtcaattcctttggattgatgatgaagatctgattatggaatgctgagcatctgattgtgcatgtatcctgatttcag

Basic information

species Physcomitrella patens
transcript PP1S104_112V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S104_112V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 5'ss of exon 5
ACAAGGCAGAATGAGGAGTTGGCGACGGATGCACTTTCTATTCATGGCTATGAGCATTACAAAGCTAAAGACTACGTCCTTGCTCATGCTCCTTTTATTGgtgcgtttgtctcacaacttttccaggatgattgtgccaaagtagtaactgtgaggctggagctgtgtgagtacgatttaggatgtattttattttgatttactcatgttgtatcagtcaattcctttggattgatgatgaagatctgattatggaatgctgagcatctgattgtgcatgtatcctgatttcag
 || || | ||||| ||  |  | | |||||| ||| || | || |||| |||||||||||| || ||||||||   ||||||||||||||||||    |||  |        | |  | ||  |   |  || ||      |  ||   |   |   | |  ||| ||| |||    | |||   | || || |   | ||                                                                                            
TCATGGAACAATGATGAACTCACAATGGATGCTCTTCCTGTACACGGCTTTGAGCATTACAAGGCGAAAGACTATTCCCTTGCTCATGCTCCTTTCCCAGgtcag--------agatttgttggaaagtagtt-tgtt----ttctaggggaaggaaagcatatgtttgaatacttactcggaa--aattgatgtgagtgtag-------------------------------------------------------------------------------------------

upper sequence: PP1S104_112V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: Vv06s0061g00940.t01 (Vitis vinifera), 5'ss of exon 5
ACAAGGCAGAATGAGGAGTTGGCGACGGATGCACTTTCTATTCATGGCTATGAGCATTACAAAGCTAAAGACTACGTCCTTGCTCATGCTCCTTTTATTGgtgcgtttgtctcacaacttttccaggatgattgtgccaaagtagtaactgtgaggctggagctgtgtgagtacgatttaggatgtattttattttgatttactcatgttgtatcagtcaattcctttggattgatgatgaagatctgattatggaatgctgagcatctgattgtgcatgtatcctgatttcag
||| || | ||||| ||| | ||||| |||||  |  || | ||||||| |||||||||||| || || |||||   ||||||||||||||||||    |||     | | |  |       |     |  ||||||   |  ||  | | | |  ||| |    |    |||  | ||    |  |||| | | |                                                                                                  
ACATGGAATAATGATGAGCTTGCGACAGATGCCTTGCCTGTACATGGCTTTGAGCATTACAAGGCAAAGGACTATTCCCTTGCTCATGCTCCTTTCTCAGgtaaacatattttgctttcaaacttcagtc-ttgtgcatgaacagataat-taactctgaaatcatt---gtatcacttt---tacatttgaatatag------------------------------------------------------------------------------------------------