1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CACTGTTGTCGACAGAGCAGTCAATATTACACCGCTGGAAGATGAATTATCTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggtttacgatctccgtccatgataacctcttccgaaatgaatgttttagtcaaggtttatcgttttgctcattgttctttcctgatcttgtttag
species | Physcomitrella patens |
transcript | PP1S9_32V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTNGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|208370262|gb|DC952084.1|DC952084
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: AGAGAT-AAGCA-TTGGAAATGAT-GG GGC-TTGCTNGACCAAGCTCACATACTCC-AACCCAGCGGTTGATGTTATTEST: gi|100378310|gb|BY949787.1|BY949787
genomic: AGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGGCCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTGTTEST: gi|208359261|gb|DC939070.1|DC939070
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|18342157|gb|BJ174192.1|BJ174192
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCEST: gi|208373441|gb|DC941052.1|DC941052
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCC
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100358635|gb|BY965746.1|BY965746
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100387784|gb|BY970529.1|BY970529
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: TNCAAGCATCAACTCCATTCCCAGAGATAAAGCATTTTGGAAATGATGGG GGCTTTGCTGGGACCAAGCTCACATACTCCAAAACCAAGCGGTTGATGTTAEST: gi|208368227|gb|DC931453.1|DC931453
genomic: TCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTT-GGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGG-ACCAAGCTCACATACTCCAAA-CCAAGCGGTTGATGTTA
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100388020|gb|BY988493.1|BY988493
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|162265878|gb|FC442465.1|FC442465
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|208357096|gb|DC942730.1|DC942730
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|208393431|gb|DC942515.1|DC942515
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|208391878|gb|DC945957.1|DC945957
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: AGAGATAAAGCA-TTGGAAATGATGGG GGC-TTGCTGGACCCAGCTCACATACTCCAAACCAAGCNGTTGATGTTATTEST: gi|208396861|gb|DC908181.1|DC908181
genomic: AGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|162265877|gb|FC442464.1|FC442464
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100397943|gb|BY954009.1|BY954009
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|162225889|gb|FC402181.1|FC402181
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|162280268|gb|FC456285.1|FC456285
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|208387672|gb|DC937237.1|DC937237
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100444933|gb|BY982761.1|BY982761
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGNACCA-GCTCACATACTCCAAACCAAGCGGTTGATGTTATEST: gi|162240163|gb|FC418290.1|FC418290
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGG-ACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTAT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|208384457|gb|DC911543.1|DC911543
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100405823|gb|BY973872.1|BY973872
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|208368003|gb|DC951014.1|DC951014
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100417073|gb|BY957153.1|BY957153
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|162230915|gb|FC406754.1|FC406754
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|162240162|gb|FC418289.1|FC418289
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100374498|gb|BY985807.1|BY985807
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|208400060|gb|DC908623.1|DC908623
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|162280269|gb|FC456286.1|FC456286
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|208391737|gb|DC937955.1|DC937955
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100399961|gb|BY990708.1|BY990708
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|162230914|gb|FC406753.1|FC406753
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|208375442|gb|DC940496.1|DC940496
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|208386854|gb|DC953507.1|DC953507
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100449088|gb|CJ973387.1|CJ973387
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100385442|gb|BY969779.1|BY969779
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATTEST: gi|100436109|gb|BY979384.1|BY979384
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
EST: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGG GGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
genomic: CTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggttt ... tcttgtttagGGCTTTGCTGGACCAAGCTCACATACTCCAAACCAAGCGGTTGATGTTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTGTTGTCGACAGAGCAGTCAATATTACACCGCTGGAAGATGAATTATCTCCAAGCATCAACTCCATTCCAAGAGATAAAGCATTTGGAAATGATGGGgtactggtttacgatctccgtccatgataacctcttccgaaatgaatgttttagtcaaggtttatcgttttgctcattgttctttcctgatcttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA