1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AACTACCATAATTTGGGCGACGGTCAAGATGCGACTGTGGCAATGCAGAAGAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAGgtaatcttcttgggctccaataatctgacaacggaaacttttaaactatctgagctagtgattgctgttggtactaatgtgttctttgtcacatacacta...
species | Physcomitrella patens |
transcript | PP1S9_234V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAG GCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGACEST: gi|37823355|gb|BJ581421.1|BJ581421
genomic: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAGgtaatcttct ... ttttcaacagGCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGAC
EST: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAG GCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGACEST: gi|18341786|gb|BJ173821.1|BJ173821
genomic: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAGgtaatcttct ... ttttcaacagGCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGAC
EST: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAG GCTGNTGNAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGACEST: gi|37831005|gb|BJ589017.1|BJ589017
genomic: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAGgtaatcttct ... ttttcaacagGCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGAC
EST: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAG GCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGACEST: gi|162255475|gb|FC431889.1|FC431889
genomic: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAGgtaatcttct ... ttttcaacagGCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGAC
EST: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAG GCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGACEST: gi|37828323|gb|BJ586335.1|BJ586335
genomic: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAGgtaatcttct ... ttttcaacagGCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGAC
EST: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAG GCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGACEST: gi|18336785|gb|BJ168808.1|BJ168808
genomic: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAGgtaatcttct ... ttttcaacagGCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGAC
EST: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAG GCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGAC
genomic: GAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAGgtaatcttct ... ttttcaacagGCTGCTGGAAGTTTGGGACTCTCAGCTGTTGAAGGTGATACTGTTATGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTACCATAATTTGGGCGACGGTCAAGATGCGACTGTGGCAATGCAGAAGAAAGTCTGGCTCCCAGAAGCTCCTTCAAAATACAGCCCAACTCAAAGAGgtaatcttcttgggctccaataatctgacaacggaaacttttaaactatctgagctagtgattgctgttggtactaatgtgttctttgtcacatacacta
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